Raoultella ornithinolytica (ID 15885) - Genome - NCBI

Warning: The NCBI web site requires JavaScript to function. more...

Raoultella ornithinolytica
Representative genome: Raoultella ornithinolytica
Download sequences in FASTA format for genome, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Raoultella ornithinolytica genome, protein
All 188 genomes for species:
Browse the list
Download sequence and annotation from RefSeq or GenBank

Display Settings:

Overview

Format

Summary

Send to:

Choose Destination

File
Clipboard
Collections

Links from Taxonomy

ID: 15885

Organism Overview ; Genome Assembly and Annotation report [190] ; Genome Tree report [96] ; Plasmid Annotation Report [121]

Raoultella ornithinolytica

Raoultella ornithinolytica overview

Lineage: Bacteria[37515]; Pseudomonadota[11108]; Gammaproteobacteria[4595]; Enterobacterales[798]; Enterobacteriaceae[395]; Klebsiella/Raoultella group[20]; Raoultella[4]; Raoultella ornithinolytica[1]

Summary

Sequence data:

genome assemblies: 190; sequence reads: 1

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 5.70277

median protein count: 5240

median GC%: 55.6

Publications (limited to 20 most recent records)

Co-existence of tmexCD2-toprJ2 and bla(NDM-1) on a single plasmid carried by Raoultella ornithinolytica isolated from public garbage bins. Li J, et al. J Glob Antimicrob Resist 2024 Jun
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Du J, et al. Genome Biol 2024 Mar 21
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023
Evaluation of Phenotypic Tests to Detect Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella oxytoca Complex Strains. Campos-Madueno EI, et al. J Clin Microbiol 2023 Apr 20
Snapshot of resistome, virulome and mobilome in aquaculture. Salgueiro V, et al. Sci Total Environ 2023 Dec 20
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. Che Y, et al. Microbiome 2022 Jan 25
KPC-3-, GES-5-, and VIM-1-Producing Enterobacterales Isolated from Urban Ponds. Teixeira P, et al. Int J Environ Res Public Health 2022 May 11
Emergence of Tn1999.7, a New Transposon in bla(OXA-48)-Harboring Plasmids Associated with Increased Plasmid Stability. Sattler J, et al. Antimicrob Agents Chemother 2022 Nov 15
Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Cuénod A, et al. Genome Med 2021 Sep 13
MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8
Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan. Sekizuka T, et al. Environ Microbiol Rep 2019 Aug
FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science. Sichtig H, et al. Nat Commun 2019 Jul 25
Characterization of NDM-5- and CTX-M-55-coproducing Escherichia coli GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay. Sekizuka T, et al. Infect Drug Resist 2019
Potential of the strain Raoultella sp. KDF8 for removal of analgesics. Palyzová A, et al. Folia Microbiol (Praha) 2018 May
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Parks DH, et al. Nat Biotechnol 2018 Nov
Complete Genome Sequence of a bla(KPC-2)-Positive Klebsiella pneumoniae Strain Isolated from the Effluent of an Urban Sewage Treatment Plant in Japan. Sekizuka T, et al. mSphere 2018 Sep 19
Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. Moradigaravand D, et al. mBio 2017 Feb 21
Draft Genome Sequences of Exfoliative Toxin A-Producing Staphylococcus aureus Strains B-7772 and B-7777 (CC8/ST2993) and B-7774 (CC15/ST2126), Isolated in a Maternity Hospital in the Central Federal District of Russia. Abaev I, et al. Genome Announc 2016 Mar 3
Recent independent emergence of multiple multidrug-resistant Serratia marcescens clones within the United Kingdom and Ireland. Moradigaravand D, et al. Genome Res 2016 Aug
Genomics and Ecophysiology of Heterotrophic Nitrogen-Fixing Bacteria Isolated from Estuarine Surface Water. Bentzon-Tilia M, et al. mBio 2015 Jul 7

Representative (genome information for reference and representative genomes)

Reference genome:

Raoultella ornithinolytica 39282_A01

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Un	-	.	-	5.61	55.7	5,034	25	85	15	5,234	75

Dendrogram (based on genomic BLAST)

Supplemental Content

Tools

BLAST Genome
BLAST Genome

Related information

Assembly
Related Assembly records
BioProject
Related BioProjects
Components
Constituent nucleotide sequence
Protein
Constituent protein sequence
PubMed
PubMed articles cited by genome record
Taxonomy
Taxonomy sequences associated with genome record

Recent activity

Clear Turn Off Turn On

Raoultella ornithinolytica
Raoultella ornithinolytica

Genome
Genome Links for Taxonomy (Select 1286170) (1)
Genome

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI > Genomes & Maps > Genome