Poecile atricapillus (ID 33953) - Genome - NCBI

Warning: The NCBI web site requires JavaScript to function. more...

Poecile atricapillus (Black-capped chickadee)
Representative genome: Poecile atricapillus (assembly bPoeAtr1.hap1)
Download sequences in FASTA format for genome, transcript, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Poecile atricapillus genome
All 4 genomes for species:
Browse the list
Download sequence and annotation from RefSeq or GenBank

Display Settings:

Overview

Format

Summary

Send to:

Choose Destination

File
Clipboard
Collections

Links from Taxonomy

ID: 33953

Organism Overview ; Genome Assembly and Annotation report [4] ; Organelle Annotation Report [1]

Poecile atricapillus (Black-capped chickadee)

Poecile atricapillus overview

Lineage: Eukaryota[15557]; Metazoa[7782]; Chordata[3579]; Craniata[3544]; Vertebrata[3544]; Euteleostomi[3500]; Archelosauria[1076]; Archosauria[1039]; Dinosauria[1034]; Saurischia[1034]; Theropoda[1034]; Coelurosauria[1034]; Aves[1034]; Neognathae[1009]; Passeriformes[351]; Paridae[6]; Poecile[1]; Poecile atricapillus[1]

Poecile atricapilla genome reference project

Summary

Sequence data:

genome assemblies: 4

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 1047.56

median protein count: 7102

median GC%: 41.3047

NCBI Annotation Release:

Publications (limited to 20 most recent records)

Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, et al. Nature 2021 Apr
Dense sampling of bird diversity increases power of comparative genomics. Feng S, et al. Nature 2020 Nov
Mitogenomic data resolve basal relationships among passeriform and passeridan birds. Keith Barker F Mol Phylogenet Evol 2014 Oct

Representative (genome information for reference and representative genomes)

Reference genome:

Poecile atricapillus bPoeAtr1.hap1

Submitter: Vertebrate Genomes Project

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene
	Chr	1	-	CM059930.1	181.57	40.3	-	-	-	-	-

	Chr	2	-	CM059931.1	154.67	39.5	-	-	-	-	-

	Chr	3	-	CM059932.1	116.92	40.1	-	-	-	-	-

	Chr	4	-	CM059933.1	76.76	40.0	-	-	-	-	-

	Chr	5	-	CM059934.1	44.58	42.5	-	-	-	-	-

	Chr	6	-	CM059935.1	38.69	42.7	-	-	-	-	-

	Chr	7	-	CM059936.1	34.4	43.2	-	-	-	-	-

	Chr	8	-	CM059937.1	27.35	43.9	-	-	-	-	-

	Chr	9	-	CM059938.1	24.5	44.7	-	-	-	-	-

	Chr	10	-	CM059939.1	21.97	43.4	-	-	-	-	-

	Chr	11	-	CM059940.1	21.74	43.9	-	-	-	-	-

	Chr	12	-	CM059941.1	20.47	44.2	-	-	-	-	-

	Chr	13	-	CM059942.1	18.74	45.5	-	-	-	-	-

	Chr	14	-	CM059943.1	17.25	45.9	-	-	-	-	-

	Chr	15	-	CM059944.1	16.58	47.2	-	-	-	-	-

	Chr	16	-	CM059945.1	14.91	47.0	-	-	-	-	-

	Chr	17	-	CM059946.1	12.04	47.7	-	-	-	-	-

	Chr	18	-	CM059947.1	11.67	41.4	-	-	-	-	-

	Chr	19	-	CM059948.1	11.51	49.8	-	-	-	-	-

	Chr	20	-	CM059949.1	11.24	48.7	-	-	-	-	-

	Chr	21	-	CM059950.1	10.92	47.8	-	-	-	-	-

	Chr	22	-	CM059951.1	8.29	48.7	-	-	-	-	-

	Chr	23	-	CM059952.1	7.55	52.7	-	-	-	-	-

	Chr	24	-	CM059953.1	7.33	51.2	-	-	-	-	-

	Chr	25	-	CM059954.1	7.23	49.9	-	-	-	-	-

	Chr	26	-	CM059955.1	7.05	49.2	-	-	-	-	-

	Chr	27	-	CM059956.1	6.45	52.9	-	-	-	-	-

	Chr	28	-	CM059957.1	6.41	53.1	-	-	-	-	-

	Chr	29	-	CM059958.1	5.36	51.6	-	-	-	-	-

	Chr	30	-	CM059959.1	4.73	51.8	-	-	-	-	-

	Chr	31	-	CM059960.1	4.56	48.6	-	-	-	-	-

	Chr	32	-	CM059961.1	4.03	49.3	-	-	-	-	-

	Chr	33	-	CM059962.1	4.33	55.3	-	-	-	-	-

	Chr	34	-	CM059963.1	3.88	49.0	-	-	-	-	-

	Chr	35	-	CM059964.1	3.54	55.5	-	-	-	-	-

	Chr	36	-	CM059965.1	1.85	50.2	-	-	-	-	-

	Chr	37	-	CM059966.1	3.42	51.2	-	-	-	-	-

	Chr	38	-	CM059967.1	3.12	46.6	-	-	-	-	-

	Chr	39	-	CM059968.1	1.64	58.7	-	-	-	-	-

	Chr	W	-	CM059969.1	107.92	42.0	-	-	-	-	-

	Chr	Z	-	CM059970.1	146.58	40.0	-	-	-	-	-

		-	NC_024867.1	-	0.02	48.6	13	2	22	-	13

	Un	-	.	-	17.37	49.8	-	-	-	-	-

Chromosomes

Click on chromosome name to open Genome Data Viewer

Supplemental Content

NCBI Resources

Genome Data Viewer
Genome Data Viewer

Tools

BLAST Genome
BLAST Genome

Related information

Assembly
Related Assembly records
BioProject
Related BioProjects
Gene
Related Gene
Components
Constituent nucleotide sequence
Protein
Constituent protein sequence
PubMed
PubMed articles cited by genome record
Taxonomy
Taxonomy sequences associated with genome record

Recent activity

Clear Turn Off Turn On

Poecile atricapillus
Poecile atricapillus

Genome
Genome Links for Taxonomy (Select 48891) (1)
Genome

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI > Genomes & Maps > Genome