Genome

Salmonella enterica Causes enteric infections Lineage: Bacteria[37515]; Pseudomonadota[11108]; Gammaproteobacteria[4595]; Enterobacterales[798]; Enterobacteriaceae[395]; Salmonella[3]; Salmonella enterica[1]

Salmonella. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. There are now two More...Salmonella species, Salmonella bongori and Salmonella enterica. Certain serovars of Salmonella enterica are responsible for more serious diseases such as Typhoid fever. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread. Less...

Summary Sequence data:  genome assemblies: 16128; sequence reads: 538  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 4.81684  median protein count: 4501  median GC%: 52.1 Publications (limited to 20 most recent records) Genomic analysis of azithromycin-resistant Salmonella from food animals at slaughter and processing, and retail meats, 2011-2021, United States. Ge B, et al. Microbiol Spectr 2024 Jan 11 Whole-genome sequencing of extensively drug-resistant Salmonella enterica serovar Typhi clinical isolates from the Peshawar region of Pakistan. Mumtaz MN, et al. J Infect Public Health 2024 Feb Epidemiological and Whole Genome Sequencing Analysis of Restaurant Salmonella Enteritidis Outbreak Associated with an Infected Food Handler in Jiangxi Province, China, 2023. Peng S, et al. Foodborne Pathog Dis 2024 May The spread of pESI-mediated extended-spectrum cephalosporin resistance in Salmonella serovars-Infantis, Senftenberg, and Alachua isolated from food animal sources in the United States. Li C, et al. PLoS One 2024 Meningitis and Bacteremia by Unusual Serotype of Salmonella enterica Strain: A Whole Genome Analysis. Brek T, et al. Interdiscip Perspect Infect Dis 2024 Occurrence and characterization of rmtB-harbouring Salmonella and Escherichia coli isolates from a pig farm in the UK. Navickaite I, et al. J Antimicrob Chemother 2024 Jun 3 Insights into the Evolution of IncR Plasmids Found in the Southern European Clone of the Monophasic Variant of Salmonella enterica Serovar Typhimurium. Vázquez X, et al. Antibiotics (Basel) 2024 Mar 29 Population structure of the Salmonella enterica serotype Oranienburg reveals similar virulence, regardless of isolation years and sources. González-Torres B, et al. Gene 2023 Jan 30 Role of Stress-Induced Proteins RpoS and YicC in the Persistence of Salmonella enterica subsp. enterica Serotype Typhimurium in Tomato Plants. Deblais L, et al. Mol Plant Microbe Interact 2023 Feb Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil. de Jesus Bertani AM, et al. Sci Rep 2023 Feb 9 Association of ISVsa3 with Multidrug Resistance in Salmonella enterica Isolates from Cattle (Bos taurus). Lewis GL, et al. Microorganisms 2023 Mar 1 Characterization of resistance genes and plasmids from sick children caused by Salmonella enterica resistance to azithromycin in Shenzhen, China. Wang H, et al. Front Cell Infect Microbiol 2023 Evidence of international transmission of mobile colistin resistant monophasic Salmonella Typhimurium ST34. Supa-Amornkul S, et al. Sci Rep 2023 May 1 Serotypes, Antimicrobial Resistance Profiles, and Virulence Factors of Salmonella Isolates in Chinese Edible Frogs (Hoplobatrachus rugulosus) Collected from Wet Markets in Hong Kong. Boss S, et al. Foods 2023 Jun 1 Prevalence and genetic diversity of multidrug-resistant Salmonella Typhimurium monophasic variant in a swine farm from China. Zhou L, et al. Front Microbiol 2023 Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics. Sim EM, et al. PLoS One 2023 A comprehensive genomic catalog from global cold seeps. Han Y, et al. Sci Data 2023 Sep 8 Identification of virulence factors and antibiotic resistance in Salmonella enterica subsp. enterica serovar Javiana (FARPER-220) isolated from broiler chickens. Tataje-Lavanda L, et al. Microbiol Resour Announc 2023 Dec 14 Whole-Genome Sequencing Analysis of Non-Typhoidal Salmonella Isolated from Breeder Poultry Farm Sources in China, 2020-2021. Ju Z, et al. Antibiotics (Basel) 2023 Nov 19 Antimicrobial resistance and genomic characteristics of Salmonella from broilers in Shandong Province. Zhao L, et al. Front Vet Sci 2023 More...  Representative (genome information for reference and representative genomes) Reference genome:   Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Submitter: Washington University Genome Sequencing Center Human Pathogen Morphology: Gram:Negative, Shape:Bacilli, Motility:Yes Environment: OxygenReq:Facultative, OptimumTemperature:37, TemperatureRange:Mesophilic, Habitat:HostAssociated Phenotype: Disease:Gastroenteritis and food poisoning Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr - NC_003197.2 AE006468.2 4.86 52.2 4,452 22 85 10 4,608 39 Plsm pSLT NC_003277.2 AE006471.2 0.09 53.1 102 - - 1 109 - Dendrogram (based on genomic BLAST) External Resources Salmonella Org