Hippopotamus amphibius (ID 7063) - Genome - NCBI

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Hippopotamus amphibius (hippopotamus)
Representative genome: Hippopotamus amphibius kiboko (assembly mHipAmp2.hap2)
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ID: 7063

Organism Overview ; Genome Assembly and Annotation report [5] ; Organelle Annotation Report [1]

Hippopotamus amphibius (hippopotamus)

Hippopotamus amphibius overview

Lineage: Eukaryota[15557]; Metazoa[7782]; Chordata[3579]; Craniata[3544]; Vertebrata[3544]; Euteleostomi[3500]; Mammalia[873]; Eutheria[699]; Laurasiatheria[340]; Artiodactyla[152]; Whippomorpha[39]; Ancodonta[2]; Hippopotamidae[2]; Hippopotamus[1]; Hippopotamus amphibius[1]

Summary

Sequence data:

genome assemblies: 5; sequence reads: 1

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 2533.32

median protein count: 13

median GC%: 40.9781

NCBI Annotation Release:

Publications (limited to 20 most recent records)

Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, et al. Nature 2021 Apr
Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade. Ursing BM, et al. Proc Biol Sci 1998 Dec 7

Representative (genome information for reference and representative genomes)

Reference genome:

Hippopotamus amphibius kiboko

Submitter: Vertebrate Genomes Project

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene
	Chr	1	-	CM057484.1	240.03	41.3	-	-	-	-	-

	Chr	2	-	CM057485.1	231.73	41.5	-	-	-	-	-

	Chr	3	-	CM057486.1	199.51	40.3	-	-	-	-	-

	Chr	4	-	CM057487.1	188.31	41.0	-	-	-	-	-

	Chr	5	-	CM057488.1	174.74	41.5	-	-	-	-	-

	Chr	6	-	CM057489.1	171.96	39.7	-	-	-	-	-

	Chr	7	-	CM057490.1	149.22	41.4	-	-	-	-	-

	Chr	8	-	CM057491.1	147.38	41.6	-	-	-	-	-

	Chr	9	-	CM057492.1	144.14	42.4	-	-	-	-	-

	Chr	10	-	CM057493.1	117.76	40.1	-	-	-	-	-

	Chr	11	-	CM057494.1	115.34	41.3	-	-	-	-	-

	Chr	12	-	CM057495.1	104.25	43.0	-	-	-	-	-

	Chr	13	-	CM057496.1	103.81	41.6	-	-	-	-	-

	Chr	14	-	CM057497.1	80.66	39.3	-	-	-	-	-

	Chr	15	-	CM057498.1	69.7	44.1	-	-	-	-	-

	Chr	16	-	CM057499.1	64.66	45.6	-	-	-	-	-

	Chr	17	-	CM057500.1	64.55	46.2	-	-	-	-	-

	Chr	X	-	CM057501.1	137.58	39.7	-	-	-	-	-

		-	NC_000889.1	-	0.02	42.6	13	2	22	-	13

	Un	-	.	-	32.9	56.9	-	-	-	-	-

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