Campylobacter (ID 13728) - Genome - NCBI

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ID: 13728

Organism Overview ; Genome Assembly and Annotation report [654] ; Genome Tree report [232] ; Plasmid Annotation Report [15]

Campylobacter

Group of uncharacterized isolates

Lineage: Bacteria[37515]; Campylobacterota[257]; Epsilonproteobacteria[228]; Campylobacterales[216]; Campylobacteraceae[54]; Campylobacter[49]

Isolates from a population of Campylobacter which are clearly distinct from currently recognized species are tentatively designated at the species level. These unnamed isolates have not yet been characterized using traditional methods, or the species name has not yet been validly published.

Summary

Sequence data:

genome assemblies: 654; sequence reads: 40

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 1.64174

median protein count: 1621

median GC%: 35.8

Publications (limited to 20 most recent records)

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy. Rocha U, et al. Mol Ecol Resour 2024 Feb
Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices. Huang KD, et al. Cell Rep Med 2024 Mar 19
Functional and phylogenetic analyses of camel rumen microbiota associated with different lignocellulosic substrates. Gharechahi J, et al. NPJ Biofilms Microbiomes 2022 Jun 8
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules. Baker JL, et al. Genome Res 2021 Jan
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes. Peng X, et al. Nat Microbiol 2021 Apr
Complete Genome Sequence of Strain JB001, a Member of Saccharibacteria Clade G6 ("Candidatus Nanogingivalaceae"). Baker JL Microbiol Resour Announc 2021 Jun 10
Complete Genomes of Clade G6 Saccharibacteria Suggest a Divergent Ecological Niche and Lifestyle. Baker JL mSphere 2021 Aug 25
Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes. Kim CY, et al. Genome Med 2021 Aug 27
MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8
New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters. Campanaro S, et al. Biotechnol Biofuels 2020
Longitudinal Study of Oral Microbiome Variation in Twins. Freire M, et al. Sci Rep 2020 May 14
Phenotypic and Genotypic Antibiotic Resistance Patterns in Helicobacter pylori Strains From Ethnically Diverse Population in México. Camorlinga-Ponce M, et al. Front Cell Infect Microbiol 2020
Links between environment, diet, and the hunter-gatherer microbiome. Fragiadakis GK, et al. Gut Microbes 2019
A new genomic blueprint of the human gut microbiota. Almeida A, et al. Nature 2019 Apr
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria. Olm MR, et al. Sci Adv 2019 Dec
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL, et al. Nucleic Acids Res 2018 Jan 4
Molecular epidemiology and comparative genomics of Campylobacter concisus strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease. Kirk KF, et al. Sci Rep 2018 Jan 30
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen. Stewart RD, et al. Nat Commun 2018 Feb 28
Gut microbiome transition across a lifestyle gradient in Himalaya. Jha AR, et al. PLoS Biol 2018 Nov
Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease. Espinoza JL, et al. mBio 2018 Nov 27

Dendrogram (based on genomic BLAST)

External Resources

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BLAST Genome
BLAST Genome

Related information

Assembly
Related Assembly records
BioProject
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Components
Constituent nucleotide sequence
Protein
Constituent protein sequence
PubMed
PubMed articles cited by genome record
Taxonomy
Taxonomy sequences associated with genome record

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Campylobacter
Campylobacter

Genome
txid2983840[Organism:noexp] (1)
Genome
Escherichia coli strain CFSAN061760, whole genome shotgun sequencing project
Escherichia coli strain CFSAN061760, whole genome shotgun sequencing project
gi|1449552521|gb|NIYL00000000.1|NIY 0000

Nucleotide

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