Nicotiana attenuata (ID 13243) - Genome - NCBI

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Nicotiana attenuata
Representative genome: Nicotiana attenuata (assembly NIATTr2)
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ID: 13243

Organism Overview ; Genome Assembly and Annotation report [2]

Nicotiana attenuata

Nicotiana attenuata overview

Lineage: Eukaryota[15557]; Viridiplantae[1758]; Streptophyta[1641]; Embryophyta[1630]; Tracheophyta[1603]; Spermatophyta[1585]; Magnoliopsida[1558]; eudicotyledons[1256]; Gunneridae[1256]; Pentapetalae[1256]; asterids[386]; lamiids[250]; Solanales[92]; Solanaceae[83]; Nicotianoideae[13]; Nicotianeae[13]; Nicotiana[13]; Nicotiana attenuata[1]

Summary

Sequence data:

genome assemblies: 2; sequence reads: 1

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 2096.73

median protein count: 44491

median GC%: 35.2165

NCBI Annotation Release:

Publications (limited to 20 most recent records)

Gene expression of 5-epi-aristolochene synthase and formation of capsidiol in roots of Nicotiana attenuata and N. sylvestris. Bohlmann J, et al. Phytochemistry 2002 May
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1

Representative (genome information for reference and representative genomes)

Reference genome:

Nicotiana attenuata NIATTr2

Submitter: Max Planck Institute for Chemical Ecology

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	tRNA	Gene	Pseudogene
	Chr	1	NC_031989.1	CM007391.1	110.54	41.4	2,441	62	2,156	111

	Chr	2	NC_031990.1	CM007392.1	96.36	41.1	2,287	53	1,988	95

	Chr	3	NC_031991.1	CM007393.1	72.89	41.1	1,660	18	1,425	79

	Chr	4	NC_031992.1	CM007394.1	12.33	40.2	398	7	342	14

	Chr	5	NC_031993.1	CM007395.1	57.01	40.7	1,303	23	1,168	54

	Chr	6	NC_031994.1	CM007396.1	97.57	41.6	2,053	51	1,818	98

	Chr	7	NC_031995.1	CM007397.1	114.77	41.6	2,247	45	2,009	106

	Chr	8	NC_031996.1	CM007398.1	47.76	40.5	1,254	27	1,092	55

	Chr	9	NC_031997.1	CM007399.1	50.98	41.0	958	37	865	52

	Chr	10	NC_031998.1	CM007400.1	51.08	40.8	1,170	26	1,033	45

	Chr	11	NC_031999.1	CM007401.1	61.25	41.9	1,197	26	1,043	61

	Chr	12	NC_032000.1	CM007402.1	53.49	40.8	1,299	32	1,088	58

	Un	-	.	-	1,539.65	41.4	26,224	680	23,950	1,169

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Nicotiana attenuata
Nicotiana attenuata

Genome
txid49451[Organism] (1)
Genome
RPRD1A regulation of nuclear pre-mRNA domain containing 1A [Homo sapiens]
RPRD1A regulation of nuclear pre-mRNA domain containing 1A [Homo sapiens]
Gene ID:55197

Gene
Gene Links for GEO Profiles (Select 131959038) (1)
Gene
ALG10B ALG10 alpha-1,2-glucosyltransferase B [Homo sapiens]
ALG10B ALG10 alpha-1,2-glucosyltransferase B [Homo sapiens]
Gene ID:144245

Gene

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