Genome

Staphylococcus epidermidis Common skin bacterium Lineage: Bacteria[37515]; Bacillota[6135]; Bacilli[2619]; Bacillales[1727]; Staphylococcaceae[121]; Staphylococcus[66]; Staphylococcus epidermidis[1]

Straphylococci. The genus Staphylococcus are pathogens of humans and other mammals. Traditionally they were divided into two groups based on the coagulase reaction. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally More...believed to have the greatest pathogenic potential in opportunistic infections. Staphylococcus epidermidis. This organism is the most prevalent and persistent Staphylococcus species on human skin. In recent years, S. epidermidis has emerged as a common cause of nosocomial (hospital-acquired) infections, including catheter-associated infections and septicemia, particularly in immunocompromised patients. Similar to S. aureus, Staphylococcus epidermidis is highly resistant to many antibiotics including penicillins and cephalosporins. Less...

Summary Sequence data:  genome assemblies: 1797; sequence reads: 9  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2.50584  median protein count: 2274  median GC%: 32 Publications (limited to 20 most recent records) Staphylococcus epidermidis bacteriocin A37 kills natural competitors with a unique mechanism of action. Puls JS, et al. ISME J 2024 Jan 8 A host-microbiota interactome reveals extensive transkingdom connectivity. Sonnert ND, et al. Nature 2024 Apr Cataloging the phylogenetic diversity of human bladder bacterial isolates. Du J, et al. Genome Biol 2024 Mar 21 Characterization of linezolid- and methicillin-resistant coagulase-negative staphylococci in a tertiary hospital in China. Liu C, et al. BMC Infect Dis 2024 May 10 Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023 Molecular Characterizations of the Coagulase-Negative Staphylococci Species Causing Urinary Tract Infection in Tanzania: A Laboratory-Based Cross-Sectional Study. Phillip S, et al. Pathogens 2023 Jan 24 Prevalence and Molecular Characterization of Methicillin-Resistant Staphylococci (MRS) and Mammaliicocci (MRM) in Dromedary Camels from Algeria: First Detection of SCCmec-mecC Hybrid in Methicillin-Resistant Mammaliicoccus lentus. Belhout C, et al. Antibiotics (Basel) 2023 Mar 29 Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity. Joglekar P, et al. bioRxiv 2023 Jun 23 Molecular Characterization of Clinical Linezolid-Resistant Staphylococcus epidermidis in a Tertiary Care Hospital. Campmann F, et al. Microorganisms 2023 Jul 14 Blautia parvula sp. nov., isolated from Japanese faecal samples. Miura T, et al. Int J Syst Evol Microbiol 2023 Nov Co-occurrence of cfr-mediated linezolid-resistance in ST398 LA-MRSA and non-aureus staphylococci isolated from a pig farm. Lee GY, et al. Vet Microbiol 2022 Mar Insights on catheter-related bloodstream infections: a prospective observational study on the catheter colonization and multidrug resistance. Pinto M, et al. J Hosp Infect 2022 May Draft Genome Sequence of Novel Staphylococcus epidermidis Strain EVL2000, Exhibiting Pathogenicity against Caenorhabditis elegans. Do N, et al. Microbiol Resour Announc 2022 Apr 21 Characterization of antibiotic-resistant, coagulase-negative staphylococci from fresh produce and description of Staphylococcus shinii sp. nov. isolated from chives. Cho GS, et al. J Microbiol 2022 Sep Comparative Phenotypic and Genomic Features of Staphylococci from Sonication Fluid of Orthopedic Implant-Associated Infections with Poor Outcome. Santos INM, et al. Microorganisms 2022 Jun 2 Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts. Meng Y, et al. Microbiome 2022 Aug 31 Genomic Characterization and Antimicrobial Susceptibility of Dromedary-Associated Staphylococcaceae from the Horn of Africa. Akarsu H, et al. Appl Environ Microbiol 2022 Nov 8 A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases. Tisza MJ, et al. Proc Natl Acad Sci U S A 2021 Jun 8 Whole Genome Sequencing of Methicillin-Resistant Staphylococcus epidermidis Clinical Isolates Reveals Variable Composite SCCmec ACME among Different STs in a Tertiary Care Hospital in Oman. Al-Jabri Z, et al. Microorganisms 2021 Aug 27 Antibiotic Resistance and Pathogenomics of Staphylococci Circulating in Novosibirsk, Russia. Bardasheva A, et al. Microorganisms 2021 Nov 30 More...  Representative (genome information for reference and representative genomes) Reference genome:   Staphylococcus epidermidis ASM609437v1 Submitter: Zhejiang Tianke High Technology Development Co.Ltd. Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr - NZ_CP035288.1 CP035288.1 2.47 32.2 2,199 19 61 4 2,334 51 Plsm unnamed1 NZ_CP035289.1 CP035289.1 0.02 29.5 21 - - - 22 1 Plsm unnamed2 NZ_CP035290.1 CP035290.1 0 30.1 3 - - - 3 - Dendrogram (based on genomic BLAST)