GEO Browser - GEO

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40 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Gallus gallus		BW
GSE180178	Immunoglobulin enhancers increase RNA polymerase 2 stalling at somatic hypermutation target sequences	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Homo sapiens	24	BW	Yaakov Maman	Oct 22, 2021
GSE164736	Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BW SRA Run Selector	Shalu Jhanwar	Jul 31, 2021
GSE164737	Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [RNA-seq]	Expression profiling by high throughput sequencing	Gallus gallus Mus musculus	18	BW SRA Run Selector	Shalu Jhanwar	Jul 31, 2021
GSE164738	Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus Mus musculus	30	BW	Shalu Jhanwar	Jul 31, 2021
GSE166257	Chicken (Gallus gallus) Transcriptome of Intestinal, Immune, and Reproductive Cell and Tissue Types	Expression profiling by high throughput sequencing	Gallus gallus	20	BW SRA Run Selector	David Hawkins	Apr 26, 2021
GSE151697	Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors [CUT&RUN]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	8	BW NARROWPEAK SRA Run Selector	CHANGHEE LEE	Apr 19, 2021
GSE151707	Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	5	BW NARROWPEAK SRA Run Selector	CHANGHEE LEE	Apr 19, 2021
GSE151948	Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	13	BW NARROWPEAK	CHANGHEE LEE	Apr 19, 2021
GSE150006	The connectome of neural crest enhancers reveals regulatory features of signaling systems	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	25	BEDPE BW CSV SRA Run Selector	Marcos Simoes-Costa	Apr 03, 2021
GSE164252	DNA molecular combing-based replication fork directionality profiling	Other	Gallus gallus	6	BW SRA Run Selector	Benoit Le Tallec	Mar 16, 2021
GSE152599	A regulatory sub-circuit downstream of Wnt signaling controls developmental transitions in neural crest development	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	3	BW SRA Run Selector	Marcos Simoes-Costa	Dec 17, 2020
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE142101	Metabolic reprogramming promotes neural crest migration via Yap/Tead signaling	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	5	BW SRA Run Selector	Marcos Simoes-Costa	Mar 30, 2020
GSE126880	Heterodimerization of Tfap2 pioneer factors drives epigenomic remodeling during neural crest specification	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	31	BW SRA Run Selector	Marcos Simoes-Costa	Dec 12, 2019
GSE97367	BioProject PRJNA381064: Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage (Gene expression profiling in several tetrapod species, bulk tissue RNA-seq)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Homo sapiens Monodelphis domestica Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	197	BW TXT	Diego Cortez	Oct 27, 2017
GSE85757	Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [RNA-Seq]	Expression profiling by high throughput sequencing	Gallus gallus	20	BW TXT SRA Run Selector	Daniel Murad Ibrahim	Dec 31, 2016
GSE86088	Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	40	BED BW SRA Run Selector	Daniel Murad Ibrahim	Dec 31, 2016
GSE86089	Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	60	BW	Daniel Murad Ibrahim	Dec 31, 2016
GSE58766	Expression profiling of DT40 chicken B cell line by RNA-seq	Expression profiling by high throughput sequencing	Gallus gallus	1	BW SRA Run Selector	Andrew J Oler	Sep 04, 2015
GSE41338	The evolutionary landscape of alternative splicing in vertebrate species	Expression profiling by high throughput sequencing	Anolis carolinensis Gallus gallus Mus musculus Tetraodon nigroviridis Xenopus tropicalis	21	BW TXT SRA Run Selector	Nuno L Barbosa-Morais	Dec 22, 2012