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5071 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		BED
GSE68922	∆DNMT3B4-del Contributes to Aberrant DNA Methylation Patterns in Lung Tumorigenesis	Methylation profiling by high throughput sequencing	Mus musculus	6	BED TXT SRA Run Selector	Jose Adrian Carrillo	Feb 09, 2017
GSE267982	In vivo interaction screening reveals liver-derived constraints to metastasis [Single Cell Multiome ATAC + Gene Expression]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 MTX TSV	Costanza Borrelli	May 21, 2024
GSE32166	tnni2 Binding Genome Seqences	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED SRA Run Selector	xiaoquan zhu	Sep 01, 2013
GSE120217	thCHART of roX2 lncRNA [DNA]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	18	BED BIGWIG SRA Run Selector	Matthew D Simon	Mar 11, 2020
GSE126077	ssDNA-seq mapping of DNA secondary structures in mouse ES cells	Other	Mus musculus	4	BED SRA Run Selector	Andrew Zhuo Xiao	Jun 29, 2020
GSE155961	smartSHAPE: a low-input method for transcriptome-wide RNA structure probing uncovers RNA structure landscape in mouse colonic macrophages	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	36	BED CSV TXT SRA Run Selector	Meiling Piao	Mar 31, 2021
GSE106268	single-cell-RNA-sequencing and H3K9me3 occupancy of CD8+ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED H5	Luigia Pace	Jan 17, 2018
GSE134311	scRCAT-seq: simultaneously profile RNA TSS and TES at single-cell level	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus synthetic construct	116	BED CSV GTF MTX TSV TXT SRA Run Selector	Jiawei Zhong	Aug 24, 2020
GSE249799	scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	46	BED BEDGRAPH BW TXT	Yuqing Guo	Sep 06, 2024
GSE194022	scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DataSet1: scNanoATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	7	BED BW	Fuchou Tang	Sep 07, 2022
GSE194024	scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED BW NARROWPEAK	Fuchou Tang	Sep 07, 2022
GSE96688	scMNase-seq measures chromatin accessibility and nucleosome positioning in single cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	586	BED SRA Run Selector	Keji Zhao	Jul 23, 2018
GSE56473	rd10 transcriptome analysis	Expression profiling by high throughput sequencing	Mus musculus	9	BED SRA Run Selector	Philip James Uren	Oct 26, 2014
GSE90204	polyA mRNA RNA-seq from urinary bladder (ENCSR000BZQ)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Dec 07, 2016
GSE90183	polyA mRNA RNA-seq from thymus (ENCSR000BYV)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG TSV TXT	ENCODE DCC	Dec 07, 2016
GSE90184	polyA mRNA RNA-seq from testis (ENCSR000BYW)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG TSV TXT	ENCODE DCC	Dec 07, 2016
GSE90193	polyA mRNA RNA-seq from subcutaneous adipose tissue (ENCSR000BZF)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG TSV TXT	ENCODE DCC	Dec 07, 2016
GSE90192	polyA mRNA RNA-seq from stomach (ENCSR000BZE)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG TSV TXT	ENCODE DCC	Dec 07, 2016
GSE90182	polyA mRNA RNA-seq from spleen (ENCSR000BYU)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG TSV TXT	ENCODE DCC	Dec 07, 2016
GSE90203	polyA mRNA RNA-seq from placenta (ENCSR000BZP)	Expression profiling by high throughput sequencing	Mus musculus	2	BED BIGBED BIGWIG GTF TSV TXT	ENCODE DCC	Dec 07, 2016