GEO Browser - GEO

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26 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Other	Saccharomyces cerevisiae		BIGWIG
GSE248282	Cohesin chromatin loop formation by an extrinsic motor	Genome binding/occupancy profiling by high throughput sequencing Other	Nakaseomyces glabratus Saccharomyces cerevisiae	82	BIGWIG BW MCOOL	Thomas M. Guerin	Aug 04, 2024
GSE267843	ChEC-seq2 of RNA Polymerase II and Preinitation Complex in S. cerevisiae	Other	Saccharomyces cerevisiae	171	BIGWIG TSV	D. Jake VanBelzen	Jun 18, 2024
GSE262171	Refined mechanism of promoter Nucleosome-Depleted Regions resetting after replication	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	73	BIGWIG	Sevil Zencir	Mar 25, 2024
GSE243114	A bioinformatic pipeline for analysis of M.EcoGII methylation footprint PacBio long-read sequence data	Other	Escherichia coli Saccharomyces cerevisiae	12	BAM BED BIGWIG	David Clark	Mar 15, 2024
GSE224641	Chromatin landscape of budding yeast acquiring H3K9 methylation and its reader molecule HP1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	46	BIGWIG H5 TXT	Taiki Shimizu	Feb 03, 2024
GSE242874	RNA polymerase II dynamics and mRNA stability feedback scale mRNA amounts with cell size	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Nakaseomyces glabratus Saccharomyces cerevisiae Schizosaccharomyces pombe	782	BIGWIG	Georgi Kolev Marinov	Nov 01, 2023
GSE241969	Genome-wide distribution of 5-hydroxymethyluracil and chromatin accessibility in the Breviolum minutum genome	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Bigelowiella natans Breviolum minutum Candida albicans Homo sapiens Saccharomyces cerevisiae	34	BEDGRAPH BIGWIG	Georgi Kolev Marinov	Oct 19, 2023
GSE242394	DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions (4C)	Other	Saccharomyces cerevisiae	6	BIGWIG	Lu Bai	Sep 05, 2023
GSE242400	DNA Methylation-Based High-Resolution Mapping of Long-Distance Chromosomal Interactions in Nucleosome-Depleted Regions	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Saccharomyces cerevisiae	82	BED BIGWIG COOL MATRIX TXT	Lu Bai	Sep 05, 2023
GSE193291	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast [iCLIP_miCLIP-seq]	Other	Saccharomyces cerevisiae	27	BED BIGWIG	Folkert van Werven	Dec 06, 2022
GSE193561	m6A reader Pho92 is recruited co-transcriptionally and couples translation efficacy to mRNA decay to promote meiotic fitness in yeast.	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	73	BIGWIG	Folkert van Werven	Dec 06, 2022
GSE159291	Spt4 helps RNAPII pass the +2 nucleosome barrier in vivo	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Saccharomyces cerevisiae	46	BIGWIG BW TXT SRA Run Selector	Ulku Uzun	Sep 27, 2021
GSE175991	Antisense-mediated repression of SAGA-dependent genes involves the HIR histone chaperone	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	19	BIGWIG BW SRA Run Selector	Julien Soudet	Jun 03, 2021
GSE155235	Mechanisms Coordinating Ribosomal Protein Gene Transcription in Response to Stress	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	22	BIGWIG BW SRA Run Selector	Sevil Zencir	Nov 27, 2020
GSE136602	Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication [sequencing]	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	57	BIGWIG BW SRA Run Selector	romain forey	Mar 17, 2020
GSE136605	Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication	Methylation profiling by array Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	62	BIGWIG BW CEL WIG	romain forey	Mar 17, 2020
GSE142524	Simple and efficient measurement of transcription initiation and transcript levels with STRIPE-seq	Expression profiling by high throughput sequencing Other	Homo sapiens Saccharomyces cerevisiae	24	BED BEDGRAPH BIGWIG PDF SRA Run Selector	Gabriel E Zentner	Jan 13, 2020
GSE130946	Fine chromatin-driven mechanism of transcription interference by antisense noncoding transcription	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	44	BIGWIG BW SRA Run Selector	Julien Soudet	May 10, 2019
GSE122110	Helicase subunit Cdc45 targets the checkpoint kinase Rad53 to both replication initiation and elongation complexes after fork stalling	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	9	BIGWIG BW SRA Run Selector	Charles Bradshaw	Feb 26, 2019
GSE115026	RNA Polymerase II CTD Tyrosine 1 is Required for Efficient Termination by the Nrd1-Nab3-Sen1 Pathway (NET-Seq)	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	BIGWIG SRA Run Selector	Francois Robert	Jan 21, 2019