GEO Browser - GEO

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31 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by array	Homo sapiens		BIGWIG
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	TXT PAIR CEL BIGWIG	Ben S. Wittner	Dec 20, 2012
GSE45025	Placing the HIRA histone chaperone complex in the chromatin landscape	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens	15	TXT CEL BIGWIG BED	Peter D. Adams	Apr 18, 2013
GSE51903	Control of 5mC and 5hmC by TET dioxygenases in human embryonic carcinoma cells	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	22	TXT CEL BIGWIG BED	Keith D Robertson	Jun 14, 2014
GSE54843	Acute depletion redefines the division of labor among DNA methyltransferases in methylating the human genome	Methylation profiling by genome tiling array Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	56	TXT CEL BIGWIG BED	Keith D Robertson	Oct 20, 2014
GSE66298	A DNA Hypomethylation Signature Predicts Novel Anti-Tumor Activity of LSD1 Inhibitors in SCLC	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	136	TXT IDAT CEL BIGWIG	David Soong	Jul 14, 2015
GSE67823	Master transcription factors in corneal epithelial cells	Expression profiling by array Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	41	TXT CEL BIGWIG BED	Koji Kitazawa	Apr 11, 2016
GSE73304	Next Generation Sequencing Methylation Profiling in Skeletal Muscle from Lean and Obese Subjects	Methylation profiling by high throughput sequencing Expression profiling by array	Homo sapiens	40	TXT BIGWIG	Samantha Elaine Day	Nov 01, 2015
GSE93989	PANC-1 and AsPC-1 human pancreatic carcinoma cells under hypoxia, nutrient starvation and low pH culture condition	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	TXT CEL BIGWIG	Tsuyoshi Osawa	Jan 25, 2017
GSE97484	Breast cancer cells treated with a novel KDM5 inhibitor, 5-aza-2' Deoxycytidine, or both.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Methylation profiling by array	Homo sapiens	33	TXT IDAT BIGWIG	Benjamin Leadem	Dec 07, 2017
GSE102035	Dynamic epigenetic remodeling underlies microRNA-mediated transdifferentiation of human adult fibroblasts into neuronal subtypes	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Expression profiling by array	Homo sapiens	42	TXT BW BIGWIG	Matthew James McCoy	Aug 04, 2017
GSE121522	TNF-alpha-stimulated human umblical vein endothelial cells (HUVECs)	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing Non-coding RNA profiling by array	Homo sapiens	95	TXT CEL BW BIGWIG BED	Yoshiki Higashijima	Apr 11, 2019
GSE125334	SETDB2 links E2A-PBX1 to cell cycle dysregulation in acute leukemia through CDKN2C repression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	28	TXT CEL BIGWIG BEDGRAPH	Stephen HK WONG	Jan 19, 2019
GSE134436	Characterization of IL-1α–responsive enhancers and of IL-1α -mediated changes in chromatin topology.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	32	TXT BW BIGWIG	Marek Bartkuhn	Sep 18, 2019
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	TSV CEL BIGWIG	Christopher Benner	May 06, 2015
GSE34941	Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	428	PAIR BIGWIG BED	Huimin Geng	Nov 27, 2012
GSE247818	Transcriptional determinants of lipid mobilization in human adipocytes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	27	NARROWPEAK CEL BIGWIG BEDGRAPH BED	Niklas Mejhert	Nov 24, 2023
GSE66342	Gene expression profiling and H3K9ac occupancy in Nedd4 knockdown Hep3B cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	IDAT BIGWIG	Xian Zhang	Jun 12, 2017
GSE97191	Expression profile and Histone H3 K4, K9, K27, K36 tri-methylation occupancy through the whole genome between control and AMPK knockdown Hep3B cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	IDAT BIGWIG	zhen cai	Mar 26, 2022
GSE63058	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by SNP array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	139	CYCHP CEL BIGWIG BIGBED	Giuseppe Testa	Dec 15, 2014
GSE73871	Targeting the SIN3A-PF1 Interaction inhibits Epithelial to Mesenchymal Transition and Maintenance of a Stem Cell Phenotype in Triple Negative Breast Cancer	Expression profiling by array Methylation profiling by high throughput sequencing	Homo sapiens	9	CHP CEL BIGWIG BED	Kevin Petrie	Nov 02, 2015