GEO Browser - GEO

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93 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Rattus norvegicus		BW
GSE116397	Genome-wide analysis of AR binding and transcriptomic analysis of mesenchymal subsets during prostate development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	214	BW TXT SRA Run Selector	Claire Elizabeth Nash	Jun 30, 2019
GSE198251	High depth profiling of miRNA targets with chimeric eCLIP	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	204	BED BW TSV	Gene Yeo	Jul 29, 2022
GSE163620	The conservation and divergence of epigenitic reprogramming during mammalian early development	Expression profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Mus musculus Rattus norvegicus Sus scrofa	188	BW TXT SRA Run Selector	Wei Xie	Nov 26, 2021
GSE198250	High depth profiling of miRNA targets with chimeric eCLIP [eCLIPseq]	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	188	BED BW TSV	Gene Yeo	Jul 30, 2022
GSE190906	Synthetic genomic reconstitution reveals principles of mammalian Hox cluster regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	162	BW	Jef Boeke	Dec 16, 2021
GSE167259	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus Rattus norvegicus	109	BED BW	Wei Wu	Mar 25, 2021
GSE216264	Transcriptome changes in a rat model of progressive heart failure	Expression profiling by high throughput sequencing	Rattus norvegicus	99	BW CSV XLSX SRA Run Selector	Axel Weber	Apr 15, 2024
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE108978	Short-term low-dose mTORC1 inhibition in aged rats counter-regulates age-related gene changes and blocks age-related kidney pathology	Expression profiling by high throughput sequencing	Rattus norvegicus	84	BW TXT SRA Run Selector	Jun Shi	Jun 26, 2018
GSE129704	Spinal cord injury	Expression profiling by high throughput sequencing	Rattus norvegicus	81	BW	Eric Christian Rouchka	May 04, 2019
GSE114191	Repurposing of promoters and enhancers during mammalian evolution	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Rattus norvegicus	78	BW SRA Run Selector	Francesco Nicola Carelli	Oct 01, 2018
GSE154063	Transcriptome profile of ENDOC-BH1 cells and isolated murine islets modulating TFEB expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	74	BW TXT	Rossella De Cegli	Jul 31, 2023
GSE167257	Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [SAR-seq]	Other	Homo sapiens Mus musculus Rattus norvegicus	67	BED BW SRA Run Selector	Wei Wu	Mar 25, 2021
GSE226502	Epigenetic evolution of the Ly49 gene family	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus Rattus norvegicus	65	BEDGRAPH BW CSV FA HIC TXT	Changxu Fan	Apr 20, 2024
GSE182938	Time-restricted feeding prevents deleterious metabolic effects of circadian disruption through epigenetic control of β-cell function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	62	BED BW H5 TSV	Matthew R Brown	Nov 24, 2021
GSE160808	Hippocampal GR/pCREB binding and transciptome analysis of glucocorticoid enhanced memory formation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Rattus norvegicus	60	BW	Jacobus Cornelis Buurstede	Apr 19, 2021
GSE245067	STAT1 deficiency underlies a proinflammatory imprint of naive CD4+ T cells in spondyloarthritis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	44	BW NARROWPEAK	Frédéric Crémazy	Oct 11, 2023
GSE78688	Activity-dependent transcriptional changes in human neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	43	BW SRA Run Selector	Bulent Ataman	Nov 02, 2016
GSE120131	Changes in chromatin accessibility and gene expression induced by overexpression of ONECUT transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	40	BW	Kees Albers	Apr 05, 2019
GSE124819	Activity-induced changes in the liver transcriptome after chronic spinal cord injury	Expression profiling by high throughput sequencing	Rattus norvegicus	37	BW TXT SRA Run Selector	Eric Christian Rouchka	Apr 29, 2019