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68 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		MATRIX
GSE75634	Invariant TAD boundaries constrain cell type-specific looping interactions between promoters and distal elements around the CFTR locus.	Other	Homo sapiens	10	ZIP TXT PNG MATRIX SRA Run Selector	Bryan R Lajoie	Jan 07, 2016
GSE162461	Single-cell intracellular epitope and transcript detection revealing signal transduction dynamics	Expression profiling by high throughput sequencing Other	Homo sapiens	16	XLSX TXT TSV MATRIX SRA Run Selector	Francesca Rivello	Mar 03, 2022
GSE125243	A Novel Glioma-specific Enhancer Maintains Glioma Temozolomide Sensitivity By Regulation of RasGRP3 Expression via Long-range Chromosome Interactions	Expression profiling by high throughput sequencing Other	Homo sapiens	12	WIG TXT MATRIX SRA Run Selector	Bohan Chen	Jan 18, 2019
GSE39510	Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.	Other	Homo sapiens	4	TXT MATRIX BED SRA Run Selector	ENCODE DCC	Jul 19, 2012
GSE75070	RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	14	TXT TSV MATRIX BED SRA Run Selector	Rasim Barutcu	Aug 23, 2016
GSE98015	Enhancer profiling in metastatic cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	72	TXT MATRIX BW BED	Sakari Vanharanta	Jun 12, 2018
GSE106687	Dynamic reorganization of nuclear architecture during human cardiogenesis [HiC-seq]	Other	Homo sapiens	18	TXT MATRIX BEDGRAPH BED SRA Run Selector	Charles Murry	Jan 04, 2018
GSE106690	Dynamic reorganization of nuclear architecture during human cardiogenesis	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	36	TXT NARROWPEAK MATRIX BW BEDGRAPH BED	Charles Murry	Jan 04, 2018
GSE120294	Cohesin HiChIP datasets of pluripotent and surface ectoderm cells with and without p63	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	TXT MATRIX BED SRA Run Selector	Anthony E Oro	Nov 06, 2018
GSE124409	Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	TXT TAR MATRIX BW BED SRA Run Selector	Mengfan Li	Nov 08, 2020
GSE126459	Gene expression and chromatin organization changes in lamin A/C haploinsufficient human induced pluripotent stem cell-derived cardiomyocytes [Hi-C]	Other	Homo sapiens	6	TXT MATRIX BEDGRAPH SRA Run Selector	Alessandro Bertero	Feb 13, 2019
GSE126460	Gene expression and chromatin organization changes in lamin A/C haploinsufficient human induced pluripotent stem cell-derived cardiomyocytes	Expression profiling by high throughput sequencing Other	Homo sapiens	15	TXT MATRIX BEDGRAPH	Alessandro Bertero	Feb 13, 2019
GSE130140	Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Homo sapiens	92	TXT TAR SF NARROWPEAK MATRIX COV BW BED SRA Run Selector	Zhenjia Wang	Aug 19, 2020
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175	TXT MATRIX CPG BW BEDPE BED SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE137437	DeepC: predicting 3D genome folding using megabase-scale transfer learning	Other	Homo sapiens	6	TXT MATRIX	Ron Schwessinger	Jul 08, 2020
GSE139944	Massively multiplex chemical transcriptomics at single cell resolution	Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	4	TXT RDS MATRIX SRA Run Selector	José L McFaline-Figueroa	Dec 05, 2019
GSE184749	Human iPSC Derived Enamel Organoid Guided by Single Cell Atlas of Human Tooth Development	Expression profiling by high throughput sequencing	Homo sapiens	19	TXT MTX MATRIX CSV SRA Run Selector	Hannele Ruohola-Baker	Jan 11, 2023
GSE186583	Transcriptomics informs design of a planar human enterocyte culture system that reveals metformin enhances fatty acid flux	Expression profiling by high throughput sequencing	Homo sapiens	20	TXT MATRIX H5AD H5 CSV SRA Run Selector	Jarrett Bliton	Aug 02, 2022
GSE193824	Genome wide enhancer loops (HiChIP) and 3-D high order chromatin features associated with EWS-FLI1 in Ewing Sarcoma. [HiC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	7	TXT MATRIX SRA Run Selector	Rui Dong	Mar 16, 2023
GSE193830	Genome wide enhancer loops (HiChIP) and 3-D high order chromatin features associated with EWS-FLI1 in Ewing Sarcoma.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	TXT MATRIX BW BEDPE	Rui Dong	Mar 16, 2023