GEO Browser - GEO

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1035 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		NARROWPEAK
GSE63286	Kdm5b depletion in embryonic stem cells does not induce intragenic promoters or affect transcription [ChIP-Seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	NARROWPEAK TXT SRA Run Selector	Andrew Johnston	Mar 21, 2020
GSE111902	Compendium of CD8+ T cell Data	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	67	BROADPEAK BW NARROWPEAK TSV TXT SRA Run Selector	Robert Anthony Amezquita	Mar 17, 2018
GSE161377	DBX2 REGULATION IN LIMBS SUGGESTS INTER-TAD SHARING OF ENHANCERS [ChIP-Seq reanalysis]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BROADPEAK BW NARROWPEAK TXT	Lucille Lopez-Delisle	Jan 23, 2021
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE165761	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations [ChIP-Seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Mus musculus		BW NARROWPEAK	Lucille Lopez-Delisle	Jul 20, 2021
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Third-party reanalysis Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus Homo sapiens Mus musculus	14	BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE250367	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ChIP-seq]	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	3	BW NARROWPEAK TXT	Aurelie Hintermann	Apr 17, 2024
GSE55581	Diet-induced chromatin remodeling in mice livers	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE70226	rDNA chromatin interactions in the MYC-driven Eµ-Myc transgenic mouse model of B-cell lymphoma	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	25	CSV NARROWPEAK TXT	Jeannine Diesch	Feb 06, 2019
GSE76481	Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Mus musculus	85	NARROWPEAK TXT	Elzo de Wit	Mar 01, 2016
GSE81203	Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	65	BEDGRAPH BW NARROWPEAK WIG SRA Run Selector	Jacqueline Deschamps	Sep 16, 2016
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED NARROWPEAK TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE96107	Multi-scale 3D genome rewiring during mouse neural development	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	92	BW NARROWPEAK TAR TXT SRA Run Selector	Boyan Bonev	Oct 18, 2017
GSE96693	Loss of CTCF reveals basic properties of post-mitotic epigenomes and induces heart failure	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	GTF HIC NARROWPEAK	Tom Vondriska	Aug 30, 2017
GSE97669	Promoter of lncRNA gene PVT1 is a tumor suppressor DNA element	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	267	BW NARROWPEAK TXT	Howard Y. Chang	May 31, 2018
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE101717	A TAD boundary at the HoxD locus segregates opposing limb regulatory landscapes and their target genes	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	91	BEDGRAPH MATRIX NARROWPEAK TAR TXT	Eddie Rodríguez-Carballo	Dec 22, 2017
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Other Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE110901	Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	86	HIC NARROWPEAK	Mark Dawson	May 21, 2019
GSE119663	MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BW HIC NARROWPEAK SRA Run Selector	Miao Yu	Apr 05, 2019