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1161 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Caenorhabditis elegans		SRA Run Selector
GSE83523	Transcriptome characterization of embryogenesis at a single cell resolution [C. elegans]	Expression profiling by high throughput sequencing	Caenorhabditis elegans	2281	GFF3 TXT SRA Run Selector	Alison G Cole	Mar 22, 2023
GSE186719	The impact of species-wide gene expression variation on Caenorhabditis elegans complex traits	Expression profiling by high throughput sequencing	Caenorhabditis elegans	609	TSV SRA Run Selector	Gaotian Zhang	Feb 10, 2022
GSE78779	CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq	Expression profiling by high throughput sequencing	Caenorhabditis elegans Mus musculus	228	TXT SRA Run Selector	Naftalie Senderovich	Apr 08, 2016
GSE77944	Single-cell transcriptomes of each cell of the C. elegans embryo until the 16-cell stage	Expression profiling by high throughput sequencing	Caenorhabditis elegans	219	BED TXT SRA Run Selector	Sophia C Tintori	Aug 17, 2016
GSE50548	Spatiotemporal embryonic transcriptomics reveals the evolutionary history of the endoderm germ layer	Expression profiling by high throughput sequencing	Caenorhabditis elegans	184	GFF3 TAB SRA Run Selector	Itai Yanai	Dec 11, 2014
GSE86381	Comparative transcriptomics of Steinernema and Caenorhabditis single embryos reveals gene expression divergence during early embryogenesis	Expression profiling by high throughput sequencing	Caenorhabditis angaria Caenorhabditis elegans Steinernema carpocapsae Steinernema feltiae	175	TXT SRA Run Selector	Marissa Macchietto	Sep 26, 2017
GSE122639	Binding of an X-specific condensin correlates with a reduction in active histone modifications at gene regulatory elements	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	169	TXT SRA Run Selector	Lena Annika Street	Jan 08, 2019
GSE87528	Developmental constraints shape the evolution of the nematode mid-developmental transition	Expression profiling by high throughput sequencing	Caenorhabditis elegans	161	XLSX SRA Run Selector	Harel Zalts	Apr 04, 2017
GSE112053	Effects of larval density on gene regulation in C. elegans during routine L1 synchronization	Expression profiling by high throughput sequencing	Caenorhabditis elegans	154	XLSX SRA Run Selector	Colin Conine	Jul 13, 2018
GSE67650	Developmental dynamics of C. elegans dosage compensation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	146	TXT SRA Run Selector	Sevinc Ercan	Nov 09, 2015
GSE60755	Caenorhabditis elegans high resolution developmental transcriptomic time-course	Expression profiling by high throughput sequencing	Caenorhabditis elegans	139	TXT SRA Run Selector	Itai Yanai	Feb 18, 2016
GSE114481	Chromatin accessibility dynamics across C. elegans development and ageing [DNase, MNase]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	122	BW SRA Run Selector	Julie Ahringer	Jun 01, 2018
GSE166512	Gene Regulatory Network inference in long-lived C. elegans reveals modular properties that are predictive of novel ageing genes	Expression profiling by high throughput sequencing	Caenorhabditis elegans	115	CSV SRA Run Selector	Felix Krueger	Jan 20, 2022
GSE173987	Parental exposure to environmental stress results in evolutionarily conserved intergenerational changes in offspring gene expression	Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis kamaaina Caenorhabditis tropicalis	105	TXT SRA Run Selector	Jonathan Lewis Price	May 07, 2021
GSE160304	The ZSWIM8 ubiquitin ligase mediates target-directed microRNA degradation	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Caenorhabditis elegans Drosophila melanogaster Homo sapiens Mus musculus	101	TXT SRA Run Selector	Charlie Y. Shi	Dec 22, 2020
GSE67387	Optimization of codon translation rates via tRNA modifications maintains proteome integrity	Expression profiling by high throughput sequencing	Caenorhabditis elegans Saccharomyces cerevisiae	98	TXT SRA Run Selector	Danny D. Nedialkova	Jun 04, 2015
GSE115884	Spatio-temporal m(i)RNA architecture and 3' UTR regulation in the C. elegans germline	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	97	TSV SRA Run Selector	Nikolaus Rajewsky	Nov 15, 2018
GSE45678	Genome-wide distribution of the three condensin complexes in C. elegans	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	92	BED TXT WIG SRA Run Selector	Sevinc Ercan	Sep 16, 2013
GSE124049	Neuronal Small RNAs Control Behavior Transgenerationally	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Caenorhabditis elegans	91	TXT SRA Run Selector	Itai Antoine Toker	Jun 05, 2019
GSE188612	Topoisomerases I and II facilitate the translocation of condensin DC in C. elegans [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	87	BW SRA Run Selector	Ana Karina Morao	Nov 14, 2021