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1143 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Danio rerio		SRA Run Selector
GSE95032	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [RRBS]	Methylation profiling by high throughput sequencing	Danio rerio	25	BW SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE95031	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [RNA-Seq]	Expression profiling by high throughput sequencing	Danio rerio	12	XLSX SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE95030	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	49	BED BW SRA Run Selector	Patrick Murphy	Dec 12, 2017
GSE167187	δ-cell conversion to insulin+ bihormonal cells in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	19	TXT SRA Run Selector	Claudio Carril Pardo	Jan 28, 2022
GSE186926	α6β2* nAChR Antagonist TxIB Changed Gene Expression in Zebrafish (Danio rerio) brain Induced by Alcohol Withdrawal	Expression profiling by high throughput sequencing	Danio rerio	9	TXT SRA Run Selector	Kailin Mao	Nov 03, 2021
GSE138181	runx1 controls zebrafish heart regeneration by promoting scar deposition as well as inhibiting myocardial proliferation and survival	Expression profiling by high throughput sequencing	Danio rerio	3	H5 SRA Run Selector	Bertie Gottgens	Apr 16, 2020
GSE109581	tp53 deficiency causes a wide tumor spectrum and elevates embryonal rhabdomyosarcoma metastasis in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	15	TXT SRA Run Selector	Sowmya Iyer	Sep 05, 2018
GSE134187	the role of SMN complex in tissue regeneration	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Danio rerio	48	TXT SRA Run Selector	zelin chen	Jul 01, 2022
GSE115233	sox32 Alleles Generated from Four-guide Cas9 RNP Targeting in G0 Zebrafish Embryos	Other	Danio rerio	6	FASTA SRA Run Selector	Roland S Wu	Jul 01, 2018
GSE152189	small non-coding RNA expression profile in F1 progeny from irradiated adults zebrafish	Non-coding RNA profiling by high throughput sequencing	Danio rerio	6	CSV SRA Run Selector	Leonardo Martin Martin	Feb 09, 2021
GSE151238	setd2 knockout zebrafish is survivable and fertile: differential and developmental-stress-related requirements for Setd2 and histone H3K36 trimethylation in different vertebrate animals	Expression profiling by high throughput sequencing	Danio rerio	3	TXT SRA Run Selector	Dianjia Liu	May 27, 2020
GSE168133	scRNA-seq timeline of first pharyngeal arch migratory stream in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	7	CSV SRA Run Selector	Thomas F Schilling	Nov 01, 2021
GSE171482	scRNA-seq of tailbud development in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	1	CSV SRA Run Selector	Thomas F Schilling	Dec 31, 2023
GSE181748	scRNA-seq of fin and body zebrafish melanocytes	Expression profiling by high throughput sequencing	Danio rerio	4	CSV MTX TSV SRA Run Selector	Joshua M Weiss	Jan 17, 2022
GSE101199	postnb lineage traced cells at 7 and 60 days post cryoinjury (dpi) during adult zebrafish cardiac ventricle regeneration	Expression profiling by high throughput sequencing	Danio rerio	7	XLS SRA Run Selector	Manuel J Gomez	Mar 21, 2018
GSE175979	polyA+ RNA seq of zebrafish gonad at 25 dpf and 30dpf	Expression profiling by high throughput sequencing	Danio rerio	12	TXT SRA Run Selector	Zhen-Xia Chen	May 18, 2022
GSE81340	microRNAs Establish and Maintain Uniform Cellular Phenotypes during the Architecture of Complex Tissues	Non-coding RNA profiling by high throughput sequencing	Danio rerio	12	TXT SRA Run Selector	Stefania Nicoli	Aug 22, 2017
GSE167554	miRNA overexpression modulates neutrophil migration	Expression profiling by high throughput sequencing	Danio rerio	8	XLSX SRA Run Selector	Qing Deng	Feb 25, 2022
GSE144873	miR-99 overexpression modulates neutrophil migration	Expression profiling by high throughput sequencing	Danio rerio	6	TXT XLSX SRA Run Selector	Qing Deng	Feb 06, 2021
GSE35078	miR-221 is required for endothelial tip cell behaviors during vascular development	Non-coding RNA profiling by high throughput sequencing	Danio rerio	3	SRA Run Selector	Abirami Lakshmanan	Feb 28, 2012