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116 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Xenopus laevis		SRA Run Selector
GSE165343	High expression profiling analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling	Expression profiling by high throughput sequencing	Xenopus laevis	111	TXT SRA Run Selector	Juan Larraín	Nov 10, 2021
GSE75164	Sperm is epigenetically programmed to regulate gene transcription in embryo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Xenopus laevis	106	BED BW TSV TXT SRA Run Selector	Charles Bradshaw	Mar 22, 2016
GSE154399	Robustness of retinoic acid regulatory homeostasis during early development (RNA-seq)	Expression profiling by high throughput sequencing	Xenopus laevis	96	TXT SRA Run Selector	Rajanikanth Vadigepalli	Sep 29, 2021
GSE103240	A Molecular Atlas of the Developing Ectoderm Defines Neural, Neural Crest, Placode and Non-Neural Progenitor Identity in Vertebrates.	Expression profiling by high throughput sequencing	Xenopus laevis	79	TXT SRA Run Selector	Anne-Helene Monsoro-Burq	Oct 25, 2017
GSE166544	The molecular basis of coupling between poly(A)-tail length and translational efficiency	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus Xenopus laevis	79	TXT SRA Run Selector	David Bartel	Jul 07, 2021
GSE92366	H3K4 Methylation-Mediated Memory of an Active Transcriptional State Impairs Nuclear Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	77	BED XLS SRA Run Selector	Angela Simeone	Mar 31, 2017
GSE183350	Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate (Xenopus laevis) Central Nervous System assayed by 5hmC MeDIP and by ChIP-seq for Histone Markers	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Xenopus laevis	76	BW SRA Run Selector	Ben Gregory Szaro	Jan 05, 2022
GSE165763	Anterior-Posterior Rotation Transcriptome RNA-Sequencing Analysis of X. laevis	Expression profiling by high throughput sequencing	Xenopus laevis	74	TXT SRA Run Selector	Margaret Saha	Feb 15, 2021
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control	Expression profiling by high throughput sequencing	Arabidopsis thaliana Danio rerio Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae Schizosaccharomyces pombe Xenopus laevis	64	TXT SRA Run Selector	Stephen Eichhorn	Jan 29, 2014
GSE137844	Comparative Gene Expression Profiling between Xenopus Optic Nerve and Spinal Cord Injury to Identify Genes Involved in Successful Regeneration of Vertebrate CNS Axons	Expression profiling by high throughput sequencing	Xenopus laevis	51	TXT SRA Run Selector	Ben Gregory Szaro	Aug 07, 2020
GSE87872	Gene resistance to transcriptional reprogramming following nuclear transfer is directly mediated by multiple chromatin repressive pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Xenopus laevis	48	BW TXT SRA Run Selector	Charles Bradshaw	Jun 12, 2017
GSE93195	Spemann organizer transcriptome induction by early β-Catenin, Wnt, Nodal and Siamois signals in Xenopus laevis	Expression profiling by high throughput sequencing	Xenopus laevis	46	XLSX SRA Run Selector	Edward M De Robertis	Mar 15, 2017
GSE126058	Identification of genes regulated by Erythroferrone (ERFE) in Xenopus embryos at tadpole stages.	Expression profiling by high throughput sequencing	Xenopus laevis	45	TXT SRA Run Selector	Gabriela Salinas	Feb 04, 2020
GSE147621	Proteomic and Transcriptomic Analysis of Neural Cell Fate in Developing Xenopus laevis Embryos and Explants	Expression profiling by high throughput sequencing	Xenopus laevis	42	TXT SRA Run Selector	Paul Huber	Jan 01, 2021
GSE106877	Changes in the gene expression in the olfactory organ of Xenopus laevis	Expression profiling by high throughput sequencing	Xenopus laevis	39	XLS SRA Run Selector	Carsten Lueder	Nov 14, 2020
GSE87653	Genomic integration of Wnt/b-catenin and BMP/Smad1 coordinates the transcriptional program of foregut and hindgut progenitors [RNA-seq]	Expression profiling by high throughput sequencing	Xenopus laevis	37	XLSX SRA Run Selector	Aaron M Zorn	Feb 28, 2017
GSE76342	RNAseq profiling of multiciliated cells	Expression profiling by high throughput sequencing	Xenopus laevis	36	TXT SRA Run Selector	Ian K Quigley	Dec 25, 2015
GSE125982	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Xenopus laevis	36	BED BROADPEAK NARROWPEAK SRA Run Selector	Angela Simeone	Jun 05, 2020
GSE134537	Genome-wide analysis of mRNA polyadenylation and translation during vertebrate oocyte maturation	Expression profiling by high throughput sequencing Other	Xenopus laevis	32	TXT SRA Run Selector	Michael Demian Blower	Jan 14, 2020
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021