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31 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Non-coding RNA profiling by high throughput sequencing			TDF
GSE215854	FEM2 regulates the whole genome 24-nt siRNA accumulation and CHH DNA methylation in rice [sRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	3	TDF	Dachao Xu	Oct 01, 2023
GSE215857	FEM2 regulates the whole genome 24-nt siRNA accumulation and CHH DNA methylation in rice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	11	TDF	Dachao Xu	Oct 01, 2023
GSE154500	The Rise and Fall of Billionaire siRNAs during Reproductive Development in Rice	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	4	TDF SRA Run Selector	Lili Wang	Jan 02, 2023
GSE154501	The Rise and Fall of Billionaire siRNAs during Reproductive Development in Rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	15	TDF	Lili Wang	Jan 02, 2023
GSE186406	The rise and fall of billionaire siRNAs during reproductive development in rice [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	6	TDF SRA Run Selector	Lili Wang	Jan 02, 2023
GSE152154	Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	6	TDF SRA Run Selector	Lili Wang	Dec 31, 2022
GSE152155	Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa	24	TDF	Lili Wang	Dec 31, 2022
GSE201298	ChIP-seq and Transcriptome analysis of human and chimpanzee iPS cells	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Pan troglodytes	24	TDF TXT	Kenji Ichiyanagi	Oct 26, 2022
GSE112257	Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice [sRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	2	TDF TXT SRA Run Selector	Lili Wang	Jun 21, 2022
GSE112259	Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	8	TDF	Lili Wang	Jun 21, 2022
GSE130166	Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa Oryza sativa Japonica Group	7	TDF SRA Run Selector	Lili Wang	Jul 21, 2021
GSE130168	Reinforcement of DNA methylation in CHH context through RNA-directed DNA methylation ensures sexual reproduction in rice	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa Oryza sativa Japonica Group	17	TDF	Lili Wang	Jul 21, 2021
GSE158709	The effect of RNA polymerase V on 24-nt siRNA accumulation depends on DNA methylation contexts and histone modifications in rice [ncRNA-Seq]	Non-coding RNA profiling by high throughput sequencing	Oryza sativa	3	TDF SRA Run Selector	Kezhi Zheng	Jul 07, 2021
GSE158711	The effect of RNA polymerase V on 24-nt siRNA accumulation depends on DNA methylation contexts and histone modifications in rice	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	8	TDF	Kezhi Zheng	Jul 06, 2021
GSE139020	Homology-mediated inter-chromosomal interactions in hexaploid wheat lead to specific subgenome territories following polyploidization and introgression	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Triticum aestivum	9	BED TDF TXT SRA Run Selector	yijing zhang	Nov 30, 2020
GSE140566	Epigenetic memory marks determine epiallele stability at loci targeted by de novo DNA methylation	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	16	TDF WIG SRA Run Selector	Jian-Kang Zhu	Apr 17, 2020
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE110338	Four SWI2/SNF2 chromatin remodeling proteins play roles as "double agents" in the tug of war between RNA-directed DNA methylation and active DNA demethylation in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	TDF TXT WIG	Dong-Lei Yang	Oct 29, 2018
GSE111859	RNAi mediates allele-specific epigenetic inheritance of heterochromatin	Non-coding RNA profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	57	IGV TDF	Ruby Yu	Apr 26, 2018
GSE94720	Boundary Formation is an Inherent Property of Mobile Small RNA Gradients	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	2	TDF TXT SRA Run Selector	Marja Timmermans	Dec 01, 2017