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239 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Expression profiling by high throughput sequencing	Danio rerio		TSV
GSE42846	Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos (RNA-Seq)	Expression profiling by high throughput sequencing	Danio rerio	8	TSV SRA Run Selector	Wouter Veneman	Apr 01, 2013
GSE42847	Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos	Expression profiling by high throughput sequencing	Danio rerio	36	TSV TXT	Wouter Veneman	Apr 01, 2013
GSE44026	Tmem88a Mediates GATA-dependent Specification of Cardiomyocyte Progenitors by Restricting Canonical WNT Signaling	Expression profiling by high throughput sequencing	Danio rerio	16	TSV SRA Run Selector	Todd Evans	Oct 21, 2013
GSE44351	Gene expression profiling of zebrafish embryos at 5 days post fertilization [Illumina RNA-Seq]	Expression profiling by high throughput sequencing	Danio rerio	3	TSV SRA Run Selector	Herman Pieter Spaink	Aug 01, 2013
GSE44352	Gene expression profiling of zebrafish embryos at 5 days post fertilization	Expression profiling by array Expression profiling by high throughput sequencing	Danio rerio	7	TSV TXT	Herman Pieter Spaink	Aug 01, 2013
GSE44584	The Translation Initiation Factor eIF3h Targets Specific Transcripts to Polysomes during Embryogenesis	Expression profiling by high throughput sequencing	Danio rerio	4	TSV SRA Run Selector	Todd Evans	Jun 05, 2013
GSE45209	MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection [RNA-seq]	Expression profiling by high throughput sequencing	Danio rerio	8	TSV SRA Run Selector	Annemarie H. Meijer	Sep 16, 2013
GSE45410	MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection	Expression profiling by high throughput sequencing Non-coding RNA profiling by array	Danio rerio	17	TSV TXT	Annemarie H. Meijer	Sep 16, 2013
GSE47709	Identification of zygotically transcribed genes in zebrafish by 4-thio-UTP metabolic labeling	Expression profiling by high throughput sequencing	Danio rerio	9	TSV SRA Run Selector	Patricia Heyn	Jan 16, 2014
GSE49186	Autophagy regulator DRAM1 functions downstream of MYD88 in defense against tuberculosis (RNA-seq)	Expression profiling by high throughput sequencing	Danio rerio	4	TSV SRA Run Selector	Annemarie H. Meijer	Jun 01, 2014
GSE49188	Autophagy regulator DRAM1 functions downstream of MYD88 in defense against tuberculosis	Expression profiling by array Expression profiling by high throughput sequencing	Danio rerio	16	TSV TXT	Annemarie H. Meijer	Jun 01, 2014
GSE54885	Macrophage-Expressed Perforins Mpeg1 and Mpeg1.2 Have an Anti-Bacterial Function in Zebrafish	Expression profiling by high throughput sequencing	Danio rerio	12	TSV SRA Run Selector	Annemarie H. Meijer	Sep 01, 2014
GSE58230	Phagocytosis of mycobacteria by zebrafish macrophages is dependent on the scavenger receptor Marco, a key control factor of pro-inflammatory signalling	Expression profiling by high throughput sequencing	Danio rerio	4	TSV SRA Run Selector	Annemarie H. Meijer	Aug 06, 2014
GSE68920	RNAseq profiling of zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures	Expression profiling by high throughput sequencing	Danio rerio	6	TSV SRA Run Selector	Julien Rougeot	Dec 11, 2018
GSE71573	Identification of qkia/c target genes	Expression profiling by high throughput sequencing	Danio rerio	6	TSV SRA Run Selector	sophie lemoine	Sep 17, 2017
GSE76499	Transcriptomic approaches in the zebrafish model for tuberculosis – insights into host- and pathogen-specific determinants of the innate immune response	Expression profiling by high throughput sequencing	Danio rerio	72	TSV SRA Run Selector	Annemarie H. Meijer	Jun 01, 2016
GSE77137	An evolutionarily conserved function of the pre-mRNA splicing regulator TNPO3 for T cell development	Expression profiling by high throughput sequencing	Danio rerio Mus musculus	18	TSV SRA Run Selector	Andreas S. Richter	Jan 23, 2019
GSE77480	Forward genetic screens in zebrafish identify novel molecular pathways regulating early T cell development	Expression profiling by high throughput sequencing	Danio rerio	12	TSV SRA Run Selector	Thomas Boehm	Nov 28, 2016
GSE78954	RNAseq profiling of FACS-sorted zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures	Expression profiling by high throughput sequencing	Danio rerio	26	TSV TXT SRA Run Selector	Julien Rougeot	Aug 11, 2017
GSE85755	Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations	Expression profiling by high throughput sequencing	Danio rerio Mus musculus	21	CSV FA TSV TXT SRA Run Selector	Susanne C van den Brink	Sep 28, 2017