GEO Browser - GEO

Series

Samples

Platforms

DataSets

66 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing			VCF
GSE266735	Proteogenomics analysis to identify acquired resistance-specific alterations in melanoma PDXs on MAPKi therapy [WES]	Genome variation profiling by high throughput sequencing	Homo sapiens	6	VCF	Stephanie D Byrum	May 10, 2024
GSE263567	Brd4::Nutm1 fusion gene initiates NUT carcinoma in vivo [WGS]	Genome variation profiling by high throughput sequencing	Mus musculus	4	VCF	Bin Gu	May 07, 2024
GSE234173	Long-term multi-modal recording reveals unpredictable nongenetic adaptation routes in dormant breast cancer cells. [WGS]	Genome variation profiling by high throughput sequencing	Homo sapiens	117	VCF	Heena Dhiman	Apr 16, 2024
GSE229212	Development of a ß-Globin Gene Replacement Strategy as a Therapeutic Approach for ß-Hemoglobinopathies	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Homo sapiens Mus musculus	69	CSV TXT VCF	Kristen Seim	Apr 01, 2024
GSE222193	Transient loss of Polycomb components induces an epigenetic cancer fate	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	126	BROADPEAK BW NARROWPEAK TXT VCF	Vincent Loubiere	Feb 28, 2024
GSE245770	Differential DNA methylation occurs in RUNX1 heterozygous mutations harboring hematopoietic progenitor cells [WES]	Genome variation profiling by high throughput sequencing	Homo sapiens	3	VCF	Yuki Tanaka	Feb 26, 2024
GSE245771	Differential DNA methylation occurs in RUNX1 heterozygous mutations harboring hematopoietic progenitor cells	Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Homo sapiens	13	TXT VCF	Yuki Tanaka	Feb 26, 2024
GSE240917	Engineered hydrogel reveals contribution of matrix mechanics to esophageal adenocarcinoma and identifies matrix-activated therapeutic targets [WES]	Genome variation profiling by high throughput sequencing	Homo sapiens	3	VCF	Spyros Karaiskos	Oct 27, 2023
GSE240918	Engineered hydrogel reveals contribution of matrix mechanics to esophageal adenocarcinoma and identifies matrix-activated therapeutic targets	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	15	VCF	Spyros Karaiskos	Oct 27, 2023
GSE242681	Single-plant-omics reveals the cascade of transcriptional changes during the vegetative-to-reproductive transition	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	71	TAR VCF	Ethan James Redmond	Sep 11, 2023
GSE209815	Characterization of a strain-specific Cd1 reference genome reveals potential inter- and intra-strain functional variability [gDNA]	Genome variation profiling by high throughput sequencing	Mus musculus	5	BED FA GTF TXT VCF	Isaac Jacob Kremsky	Jun 08, 2023
GSE230552	Recruitment of ETS1 to activated accessible regions promotes cilia genes transcriptional program in ciliopathy [WES]	Genome variation profiling by high throughput sequencing	Homo sapiens	4	VCF	Yun-Miao Guo	Apr 26, 2023
GSE200034	Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies	Genome variation profiling by high throughput sequencing	Solanum chilense Solanum habrochaites Solanum lycopersicum Solanum lycopersicum var. cerasiforme Solanum peruvianum Solanum pimpinellifolium	50	VCF	Basharat Ahmad Bhat	Apr 01, 2023
GSE217479	Immunoediting instructs tumor metabolic reprogramming to support immune evasion [ExomeSeq]	Genome variation profiling by high throughput sequencing	Mus musculus	6	TXT VCF	Ping-Chih Ho	Nov 15, 2022
GSE217482	Immunoediting instructs tumor metabolic reprogramming to support immune evasion	Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	45	BED BIGWIG TXT VCF	Ping-Chih Ho	Nov 15, 2022
GSE209662	Recruitment of ETS1 to activated accessible regions promotes cilia genes transcriptional program in ciliopathy	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	31	BW VCF	Yun-Miao Guo	Jul 28, 2022
GSE164906	"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis Genome variation profiling by high throughput sequencing	Mus musculus	476	BW TAB VCF	Yongbing Zhao	Jul 21, 2022
GSE165136	SNP effect on chromatin accessibility (Whole genome sequencing)	Genome variation profiling by high throughput sequencing	Mus musculus	3	VCF SRA Run Selector	Yongbing Zhao	Jul 21, 2022
GSE193956	Use of Bulk Segregant Analysis for Determining the Genetic Basis of Azole Resistance in the Opportunistic Pathogen Aspergillus fumigatus	Genome variation profiling by high throughput sequencing	Aspergillus fumigatus	18	VCF	Fei Sang	May 11, 2022
GSE197128	Allele-specific aberration of imprinted domain chromosome architecture associates with large offspring syndrome [DNA-Seq]	Genome variation profiling by high throughput sequencing	Bos indicus	1	VCF	Rocío Melissa Rivera	Apr 22, 2022