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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Mycobacterium avium subsp. paratuberculosis K-10
GSE199476	Exploring transcriptional regulation of Mycobacterium avium subsp. paratuberculosis after human THP-1 cell infection via dual RNA-seq analysis	Expression profiling by high throughput sequencing	Homo sapiens Mycobacterium avium subsp. paratuberculosis K-10	6		XLSX	Hong-Tae Park	Sep 21, 2022
GSE84708	Mycobacterium avium subsp. paratuberculosis (MAP) during bovine monocyte-derived macrophage infection: untreated vs. bafilomcyin A1 treatment	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis K-10	3		TXT	Elise Lamont	Jul 29, 2016
GSE71291	Mycobacterium avium subsp. paratuberculosis K-10 & phoPR comparison	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis K-10	6		TXT	Jenn-Wei Chen	Mar 01, 2016
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2		XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2		XLSX	Jennie Hamilton	Feb 28, 2015
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29		XLSX	Jennie Hamilton	Feb 28, 2015
GSE36053	Transcriptomic response of the auxotrophic Mycobacterium avium subspecies paratuberculosis (MAP) leuD mutant under environmental stresses	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	24		TXT	Jenn-Wei Chen	Feb 16, 2013
GSE43645	Expression analysis of Mycobacterium avium subsp. paratuberculosis K-10 within macrophage cell line	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis K-10	10		PAIR	CHIA-WEI WU	Jan 22, 2013
GSE43182	The Intracellular Life of Mycobacterium avium subsp. paratuberculosis During Macrophage Stress: A Key Role for the Alternative Sigma Factor, SigH	Expression profiling by high throughput sequencing	Mycobacterium avium subsp. paratuberculosis K-10	4		XLS SRA Run Selector	Pallab Ghosh	Dec 29, 2012
GSE32235	Differentially regulated genes induced by in vitro generated Mycobacterium avium subspecies paratuberculosis cell wall deficient forms	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	1		GPR	Andrea Cossu	Nov 29, 2012
GSE32237	Transcriptional profile of pathogenic and non-pathogenic in vitro generated mycobacterial cell wall deficient forms	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium tuberculosis H37Rv Mycolicibacterium smegmatis MC2 155	3		GPR	Andrea Cossu	Nov 29, 2012
GSE32241	Differentially regulated genes induced in Mycobacterium avium subspecies paratuberculosis by in vitro acid-nitrosative multi-stress	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	1		GPR	Andrea Cossu	Jun 01, 2012
GSE32242	Differentially regulated genes induced in Mycobacterium avium subspecies paratuberculosis by in vitro infection of THP-1 human macrophage cell line	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	1		GPR	Andrea Cossu	Jun 01, 2012
GSE32243	Mycobacterium avium subsp. paratuberculosis gene transcription in simulated phagosomal environment and in human macrophage infection	Expression profiling by array	Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10	2		GPR	Andrea Cossu	Jun 01, 2012