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112 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Salmonella enterica
GSE267531	The transcriptional response to low temperature is weakly conserved across Enterobacteriales	Expression profiling by high throughput sequencing	Citrobacter rodentium Enterobacter cloacae Escherichia coli Klebsiella pneumoniae Salmonella enterica Serratia marcescens	64	TXT	Daniel Stoebel	Jun 11, 2024
GSE261094	Impact of Multiple Antimicrobial Exposures on the Transfer Efficiency of Multidrug Resistance Plasmids in Salmonella enteric	Expression profiling by high throughput sequencing	Escherichia coli J53 Salmonella enterica	24	XLSX	Steven Foley	Mar 25, 2024
GSE250014	CLIP-seq of Salmonella ProQ in intracellular-like conditions	Other	Salmonella enterica	4	WIG	Erik Holmqvist	Feb 13, 2024
GSE227715	An intracellular phosphorus-starvation signal activates the PhoB/PhoR two-component system in Salmonella enterica	Expression profiling by high throughput sequencing	Salmonella enterica	16	TSV	Mauricio Henriques Pontes	Aug 07, 2023
GSE150240	The Fur Pan-regulon in E. coli shows diversity in strain-specific sets of target genes	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7 Salmonella enterica	36	GFF SRA Run Selector	Ye Gao	Aug 04, 2023
GSE150501	Reconstruction of a Pan-regulon for Fur uncovers the conservation of its transcriptional regulation in E. coli	Expression profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Escherichia coli O157:H7 Salmonella enterica	36	CSV SRA Run Selector	Ye Gao	Aug 04, 2023
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples	Other	Alistipes finegoldii Bacillus amyloliquefaciens Bacillus subtilis Caulobacter vibrioides Cryptococcus neoformans Enterococcus faecalis Escherichia coli Hoylesella timonensis Lactiplantibacillus plantarum Limosilactobacillus fermentum Limosilactobacillus reuteri Listeria monocytogenes Parabacteroides merdae Saccharomyces cerevisiae Salmonella enterica Segatella copri Staphylococcus aureus Synechocystis sp. PCC 6803 compost metagenome human feces metagenome	199	BEDGRAPH TXT XLSX SRA Run Selector	Vicent Pelechano	Mar 24, 2023
GSE161854	Typhoidal Salmonella Dendritic Cell Survival Mechanism Revealed by Dual RNA sequencing	Expression profiling by high throughput sequencing	Homo sapiens Salmonella enterica Salmonella enterica subsp. enterica serovar Typhi str. Ty2 Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	93	TXT SRA Run Selector	Alison Simmons	Nov 17, 2021
GSE182165	Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells	Expression profiling by high throughput sequencing	Salmonella enterica	12	TXT SRA Run Selector	Serajus Salaheen	Aug 19, 2021
GSE182079	A chromatin immunoprecipitation database for prokarytic organisms	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Klebsiella pneumoniae Pseudomonas putida Salmonella enterica Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Shigella flexneri Staphylococcus aureus Yersinia pseudotuberculosis	102	GFF	Ye Gao	Aug 17, 2021
GSE181770	A chromatin immunoprecipitation database for prokarytic organisms [fur]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae Salmonella enterica Shigella flexneri Yersinia pseudotuberculosis	14	GFF SRA Run Selector	Ye Gao	Aug 15, 2021
GSE179103	Niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica	Expression profiling by high throughput sequencing	Salmonella enterica	4	TSV SRA Run Selector	Alexander Predeus	Jun 30, 2021
GSE159310	Transcriptomic comparison of WT and yebEFG mutant of Salmonella enterica ATCC 14028 strains grown in LB and in the presence of sublethal concentration of nalidixic acid	Expression profiling by high throughput sequencing	Salmonella enterica	12	TXT SRA Run Selector	Ángela Mérida-Floriano	May 05, 2021
GSE152295	RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections	Expression profiling by high throughput sequencing	Achromobacter xylosoxidans Acinetobacter baumannii Aggregatibacter actinomycetemcomitans Borreliella burgdorferi Burkholderia pseudomallei Campylobacter jejuni Enterococcus faecalis Escherichia coli Francisella tularensis Haemophilus influenzae Helicobacter pylori Klebsiella pneumoniae Legionella pneumophila Listeria monocytogenes Mycobacterium tuberculosis Neisseria gonorrhoeae Neisseria meningitidis Pseudomonas aeruginosa Salmonella enterica Shigella flexneri Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus epidermidis Streptococcus agalactiae Streptococcus pneumoniae Streptococcus pyogenes Streptococcus suis Vibrio cholerae Yersinia pseudotuberculosis	1122	TXT SRA Run Selector	Kemal Avican	Apr 23, 2021
GSE159054	The role of Salmonella Genomic Island 4 in metal tolerance of Salmonella enterica serovar I 4,[5],12:i:- pork outbreak isolate USDA15WA-1	Expression profiling by high throughput sequencing	Salmonella enterica	12	TXT SRA Run Selector	Sathesh K Sivasankaran	Dec 08, 2020
GSE156765	Salmonella Typhimurium uses smooth swimming to increase invasion in the mammalian gut	Expression profiling by high throughput sequencing	Salmonella enterica	6	TXT SRA Run Selector	Craig Martens	Nov 02, 2020
GSE135768	ChIP-seq study on Dnd proteins	Genome binding/occupancy profiling by high throughput sequencing	Salmonella enterica	24	TDF SRA Run Selector	Xiaolin Wu	May 21, 2020
GSE135910	Mapping PT modifications in bacteria	Other	Escherichia coli K-12 Salmonella enterica	12	TXT SRA Run Selector	Xiaolin Wu	May 21, 2020
GSE135949	Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Escherichia coli BW25113 Escherichia coli K-12 Salmonella enterica	39	TDF TXT	Xiaolin Wu	May 21, 2020
GSE132633	Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to soil media	Expression profiling by high throughput sequencing	Salmonella enterica	9	CXB TXT SRA Run Selector	Jasper Schierstaedt	Mar 31, 2020