GEO Browser - GEO

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30 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Caenorhabditis briggsae
GSE15169	Repertoire and evolution of miRNA genes in four divergent nematode species	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis remanei Pristionchus pacificus	4	FA QUAL	Eugene Berezikov	Sep 08, 2009
GSE15233	C. briggsae developmental timecourse	Expression profiling by array	Caenorhabditis briggsae	13	TXT	Itai Yanai	Aug 31, 2009
GSE15551	C. briggsae and C. elegans developmental timecourses	Expression profiling by array	Caenorhabditis briggsae Caenorhabditis elegans	29	TXT	Itai Yanai	Aug 31, 2009
GSE23667	Array-based cross-species hybridization between genera of Rhabditidae (Nematoda)	Genome variation profiling by genome tiling array	Acrobeloides sp. MAH-2010 Caenorhabditis briggsae Caenorhabditis elegans Chiloplacus sp. MAH-2010 Mesorhabditis sp. MAH-2010 Oscheius sp. FVV-2 Oscheius tipulae	8	CEL CHP TXT	Michael A Herman	Aug 18, 2010
GSE31422	Developmental milestones punctuate gene expression in the Caenorhabditis embryo	Expression profiling by array	Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis remanei	150	TXT	Itai Yanai	Mar 01, 2012
GSE35606	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells (miRNA)	Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	4	GPR	Janet M. Young	Apr 02, 2012
GSE35921	miR-206 integrates multiple components of differentiation pathways to control the transition from growth to differentiation in rhabdomyosarcoma cells	Expression profiling by array Non-coding RNA profiling by array	Anopheles gambiae Apis mellifera Arabidopsis thaliana Ateles geoffroyi Betapolyomavirus macacae Bombyx mori Bos taurus Caenorhabditis briggsae Caenorhabditis elegans Canis lupus familiaris Danio rerio Drosophila melanogaster Drosophila pseudoobscura Gallid alphaherpesvirus 2 Gallus gallus Glycine max Gorilla gorilla Homo sapiens Human betaherpesvirus 5 Human gammaherpesvirus 8 Lagothrix lagotricha Lemur catta Macaca mulatta Macaca nemestrina Macacine gammaherpesvirus 4 Medicago truncatula Monodelphis domestica Murid gammaherpesvirus 4 Mus musculus Oryza sativa Ovis aries Pan paniscus Pan troglodytes Physcomitrium patens Pongo pygmaeus Populus trichocarpa Rattus norvegicus Saccharum officinarum Saguinus labiatus Schmidtea mediterranea Sorghum bicolor Sus scrofa Takifugu rubripes Tetraodon nigroviridis Xenopus laevis Xenopus tropicalis Zea mays human gammaherpesvirus 4	16	GPR	Janet M. Young	Apr 02, 2012
GSE41367	Caenorhabditis sex-specific RNAseq	Expression profiling by high throughput sequencing	Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis remanei	30	TXT SRA Run Selector	Eric S. Haag	Oct 25, 2012
GSE41461	Analysis of miRNA, piRNA and siRNA in Caenorhabditis species	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis remanei	12	TXT SRA Run Selector	Zhen Shi	Oct 11, 2012
GSE48140	mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition	Expression profiling by high throughput sequencing Other	Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis remanei	48	TXT SRA Run Selector	Michael Stadler	Jun 21, 2013
GSE48917	Chromatin Immunoprecipitation of TRA-1 in C. elegans and C. briggsae	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	19	BW SRA Run Selector	Kohta Ikegami	Nov 04, 2013
GSE53144	Male and Female DNA and RNA sequencing in several nematode species	Expression profiling by high throughput sequencing Other	Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis remanei Pristionchus pacificus	31	BEDGRAPH FPKM_TRACKING SRA Run Selector	Sarah Elizabeth Albritton	Apr 17, 2014
GSE53359	Conservation of mRNA and protein expression during development of C. elegans	Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	26	TXT SRA Run Selector	Dominic Grün	Jan 23, 2014
GSE67650	Developmental dynamics of C. elegans dosage compensation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	146	TXT SRA Run Selector	Sevinc Ercan	Nov 09, 2015
GSE75763	Analysis of Hybrid Incompatability between C nigoni and C briggsae	Non-coding RNA profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis nigoni	3	FA SRA Run Selector	Peter Sarkies	May 11, 2016
GSE76306	Analysis of Hybrid Incompatability between C nigoni and C briggsae by mRNA sequencing	Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis nigoni	14	FASTA TXT SRA Run Selector	Runsheng Li	May 11, 2016
GSE133769	Genome-wide expression analysis of Caenorhabditis briggsae SPR-4/IVP-1 and HTZ-1/IVP-2 mutants	Expression profiling by high throughput sequencing	Caenorhabditis briggsae	9	CSV TAB SRA Run Selector	Ish Jain	Jun 24, 2020
GSE135987	Transcriptional profiling of Caenorhabditis elegans and Caenorhabditis briggsae before and after heat shock	Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	12	TXT SRA Run Selector	Jacob Garrigues	Dec 17, 2019
GSE171725	Transcriptional Profiling of C. briggsae Temperate and Tropical representative strains after extreme cold	Expression profiling by high throughput sequencing	Caenorhabditis briggsae	10	TXT SRA Run Selector	Rachel Brem	Sep 09, 2021
GSE173987	Parental exposure to environmental stress results in evolutionarily conserved intergenerational changes in offspring gene expression	Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis kamaaina Caenorhabditis tropicalis	105	TXT SRA Run Selector	Jonathan Lewis Price	May 07, 2021