GEO Browser - GEO

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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Ictidomys tridecemlineatus
GSE2021	13-lined ground squirrel (Spermophilus tridecemlineatus) hibernating liver transcriptome	Expression profiling by array	Callospermophilus lateralis Ictidomys tridecemlineatus	26		Andrew Gracey	Dec 03, 2004
GSE2033	The hibernating phenotype assessed through transcript screening	Expression profiling by array	Callospermophilus lateralis Ictidomys tridecemlineatus	115		Andrew Gracey	Dec 03, 2004
GSE5414	Gene Expression data of Arctic Ground Squirrel during the multiple stages of hibernation	Expression profiling by array	Callospermophilus lateralis Ictidomys tridecemlineatus Urocitellus parryii	288		Jun Yan	Aug 03, 2006
GSE84931	RNA-Seq of eye tissues from Ground Squirrel eye and retina samples	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	5	TXT SRA Run Selector	Xiaodong Bai	Sep 12, 2016
GSE93685	Transcriptomics analysis reveals adaptive changes of hibernating retinas in 13-lined ground squirrel	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	10	TXT SRA Run Selector	Yizhao Luan	Jun 05, 2017
GSE93935	Studying iPSCs from a hibernating mammal reveals molecular mechanisms of cold resistance in neural tissues	Expression profiling by high throughput sequencing	Homo sapiens Ictidomys tridecemlineatus	18	TXT SRA Run Selector	Yizhao Luan	Mar 22, 2018
GSE106947	Dynamic Temperature-Sensitive A-to-I RNA editing in the Brain of a Heterothermic Mammal during Hibernation	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	95	BED GTF TXT SRA Run Selector	Kent Augustus Riemondy	Aug 09, 2018
GSE148651	Transcriptomic changes of optic nerves under crush during hibernation stage	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	6	TSV SRA Run Selector	Yizhao Luan	Apr 14, 2023
GSE155170	Evolutionary transcriptomics implicates HAND2 in the origins of implantation and regulation of gestation length	Expression profiling by high throughput sequencing	Carollia perspicillata Ictidomys tridecemlineatus Mesocricetus auratus Mus musculus Papio anubis	16	TXT SRA Run Selector	Katelyn Mika	Jul 28, 2020
GSE166370	GRO-seq analysis of liver gene transcription in hibernating 13-lined ground squirrels	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	15	CSV SRA Run Selector	Sandy Martin	May 10, 2021
GSE166814	Liver transcriptome dynamics during hibernation are shaped by a shifting balance between transcription and RNA stability	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	26	CSV SRA Run Selector	Sandy Martin	May 10, 2021
GSE207211	Activation of immediate early response genes initiates a restorative gene expression program during each arousal from torpor in hibernating 13-lined ground squirrels	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	31	TSV	Austin E Gillen	Apr 26, 2023
GSE223748	Mammalian Methylation Consortium	Methylation profiling by array	Acinonyx jubatus Acomys cahirinus Addax nasomaculatus Aepyceros melampus Alexandromys fortis Alexandromys maximowiczii Alexandromys mongolicus Alexandromys oeconomus Alticola barakshin Alticola semicanus Amblysomus hottentotus Antidorcas marsupialis Antrozous pallidus Aonyx cinereus Aplodontia rufa Apodemus agrarius Apodemus peninsulae Apodemus sylvaticus Apodemus uralensis Artibeus jamaicensis Arvicanthis niloticus Asellia tridens Atelerix albiventris Balaena mysticetus Balaenoptera borealis Balaenoptera musculus Bathyergus janetta Bathyergus suillus Blarina brevicauda Bos taurus Bradypus variegatus Cabassous unicinctus Caenolestes fuliginosus Callithrix geoffroyi Callithrix jacchus Callospermophilus lateralis Callospermophilus saturatus Canis latrans Canis lupus familiaris Capra hircus Capreolus capreolus Carollia perspicillata Castor canadensis Cavia aperea Cavia porcellus Cavia tschudii Cephalorhynchus commersonii Cephalorhynchus hectori hectori Cephalorhynchus hectori maui Ceratotherium simum simum Cervus canadensis Cervus elaphus Chaetophractus villosus Cheirogaleus medius Chinchilla lanigera Chlorocebus sabaeus Choloepus didactylus Choloepus hoffmanni Chrysocyon brachyurus Clethrionomys gapperi Condylura cristata Connochaetes taurinus albojubatus Cricetomys gambianus Cricetulus barabensis Cricetulus griseus Cricetulus longicaudatus Crocidura cyanea Crocuta crocuta Cryptomys hottentotus Ctenomys lewisi Ctenomys opimus Ctenomys steinbachi Cuniculus paca Cyclopes didactylus Cynopterus brachyotis Dasypus novemcinctus Daubentonia madagascariensis Delphinapterus leucas Delphinus delphis Dendrohyrax arboreus Desmodus rotundus Diceros bicornis Didelphis marsupialis Didelphis virginiana Dipus sagitta Dromiciops gliroides Echinops telfairi Eidolon helvum Elephantulus edwardii Elephantulus myurus Elephas maximus Ellobius talpinus Enhydra lutris Eozapus setchuanus Eptesicus fuscus Equus asinus somalicus Equus caballus Equus grevyi Equus quagga Erethizon dorsatum Erinaceus europaeus Eudorcas thomsonii Eulemur albifrons Eulemur coronatus Eulemur flavifrons Eulemur fulvus Eulemur fulvus collaris Eulemur macaco Eulemur mongoz Eulemur rubriventer Eulemur rufus Eulemur sanfordi Eumetopias jubatus Felis catus Fukomys damarensis Galago moholi Galea musteloides Galea musteloides leucoblephara Galeopterus variegatus Gazella leptoceros Georychus capensis Gerbillus cheesmani Gerbillus nanus Giraffa camelopardalis Glaucomys sabrinus Globicephala macrorhynchus Gorilla gorilla Hapalemur griseus Hemicentetes semispinosus Hemiechinus auritus Heterocephalus glaber Hipposideros ruber Hippotragus equinus Hippotragus niger Homo sapiens Hydrochoerus hydrochaeris Hylomys suillus Hystrix cristata Ictidomys tridecemlineatus Jaculus jaculus Kobus megaceros Lagenorhynchus albirostris Lagenorhynchus obliquidens Lasiopodomys brandtii Lasiopodomys mandarinus Lemur catta Leptonycteris yerbabuenae Lepus americanus Lepus californicus Litocranius walleri Loris tardigradus Loxodonta africana Lycaon pictus Lynx rufus Macaca mulatta Macropus fuliginosus Macropus giganteus Macroscelides proboscideus Marmota flaviventris Marmota monax Martes americana Megaptera novaeangliae Meriones libycus Meriones rex Meriones unguiculatus Mesocricetus auratus Mesoplodon bidens Micaelamys namaquensis Microcebus murinus Microgale cowani Microgale drouhardi Microgale thomasi Microtus guentheri Microtus ochrogaster Microtus pennsylvanicus Microtus richardsoni Mirza zaza Molossus molossus Monodelphis domestica Mops pumilus Muntiacus vaginalis Mus minutoides Mus musculus Mustela altaica Mustela frenata Mustela putorius furo Myocastor coypus Myodes rufocanus Myotis brandtii Myotis evotis Myotis lucifugus Myotis myotis Myotis nattereri Myotis thysanodes Myotis vivesi Myotis yumanensis Nanger dama Nanger granti Nanger soemmerringii Nannospalax ehrenbergi Nannospalax galili Napaeozapus insignis Neogale vison Neomys fodiens Neophoca cinerea Neotoma cinerea Nesogale talazaci Neurotrichus gibbsii Notamacropus agilis Notamacropus eugenii Notamacropus rufogriseus Nothocricetulus migratorius Nyctalus noctula Nycticebus coucang Nycticeius humeralis Ochotona alpina Ochotona dauurica Ochotona hyperborea Ochotona pallasi Ochotona princeps Ochotona rufescens Odobenus rosmarus divergens Odocoileus virginianus Okapia johnstoni Ondatra zibethicus Orcinus orca Oreamnos americanus Orientallactaga sibirica Ornithorhynchus anatinus Orycteropus afer Oryctolagus cuniculus Osphranter robustus Osphranter rufus Otolemur crassicaudatus Ovis aries Pan troglodytes Panthera leo Panthera tigris Papio hamadryas Paraechinus aethiopicus Paraechinus hypomelas Parascalops breweri Perodicticus potto Peromyscus californicus Peromyscus eremicus Peromyscus leucopus Peromyscus maniculatus Peromyscus polionotus Phascolarctos cinereus Phoca groenlandica Phoca vitulina Phocoena phocoena Phodopus campbelli Phodopus roborovskii Phyllostomus discolor Phyllostomus hastatus Physeter catodon Pipistrellus pipistrellus Plecotus auritus Pongo pygmaeus Procavia capensis Propithecus coquereli Propithecus diadema Propithecus tattersalli Pteropus giganteus Pteropus hypomelanus Pteropus poliocephalus Pteropus pumilus Pteropus rodricensis Pteropus vampyrus Puma concolor Rattus norvegicus Rattus rattus Rhabdomys pumilio Rhinoceros unicornis Rhinolophus alcyone Rhinolophus ferrumequinum Rhinopoma hardwickii Rhombomys opimus Rhynchonycteris naso Rousettus aegyptiacus Saccopteryx bilineata Sarcophilus harrisii Scalopus aquaticus Scapanus orarius Sciurus carolinensis Sciurus niger Setifer setosus Smutsia temminckii Sorex caecutiens Sorex cinereus Sorex hoyi Sorex isodon Sorex minutissimus Sorex palustris Sorex roboratus Sorex trowbridgii Sorex tundrensis Sorex vagrans Steno bredanensis Stenocranius gregalis Suncus murinus Suncus varilla Suricata suricatta Sus scrofa Sus scrofa domesticus Sylvilagus audubonii Sylvilagus bachmani Sylvilagus brasiliensis Sylvilagus floridanus Sylvilagus nuttallii Tachyglossus aculeatus Tadarida brasiliensis Talpa occidentalis Tamandua mexicana Tamandua tetradactyla Tamias amoenus Tamias striatus Tamias townsendii Tamiasciurus douglasii Tamiasciurus hudsonicus Tenrec ecaudatus Tolypeutes matacus Trachypithecus francoisi Tragelaphus angasii Tragelaphus eurycerus Tragelaphus imberbis Tragelaphus oryx Tragelaphus spekii Tragelaphus strepsiceros Trichechus manatus Tupaia belangeri Tupaia gracilis Tupaia longipes Tupaia tana Tursiops aduncus Tursiops truncatus Urocitellus columbianus Ursus americanus Varecia rubra Varecia variegata Vicugna pacos Vombatus ursinus Vulpes vulpes Xanthonycticebus pygmaeus Zalophus californianus Zapus princeps	15043	CSV DOCX IDAT	Steve Horvath	Aug 05, 2023
GSE227101	Kidney gene expression dynamics during torpor-arousal cycles in hibernating 13-lined ground squirrels	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	31	TSV	Austin E Gillen	Jun 01, 2024
GSE231418	Neural control of fluid homeostasis is engaged below 10°C in hibernation	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	15	XLSX	Madeleine Junkins	Feb 05, 2024
GSE237212	Evolution of neuronal cell classes and types in the vertebrate retina [Squirrel]	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	2	CSV	Joshua William Hahn	Oct 01, 2023
GSE237215	Evolution of neuronal cell classes and types in the vertebrate retina	Expression profiling by high throughput sequencing	Anolis sagrei Bos taurus Callithrix jacchus Danio rerio Didelphis marsupialis Homo sapiens Ictidomys tridecemlineatus Mustela putorius furo Ovis aries Peromyscus maniculatus Rhabdomys pumilio Sus scrofa domesticus Tupaia chinensis	118		Joshua William Hahn	Oct 01, 2023
GSE242381	Hypothalamic thyroid hormone deficiency underlies reversible anorexia in a mammalian hibernator	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	6	TAR	Viktor Feketa	Apr 03, 2024
GSE248932	StrokeofGenus: RNA-seq in five tissues of the hibernating 13-lined ground squirrel	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	101	ROBJ	Kurt Weir	Oct 23, 2024
GSE254223	Mitochondrial microRNA profiles are altered in thirteen-lined ground squirrels (Ictidomys tridecemlineatus) during hibernation	Expression profiling by high throughput sequencing	Ictidomys tridecemlineatus	24	TAB	Karyn Robichaud	Jul 31, 2024