GEO Browser - GEO

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439 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter						Joseph R Ecker
GSE10877	Highly integrated single base resolution maps of the epigenome in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Methylation profiling by array Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE10966	Highly integrated epigenome maps in Arabidopsis - whole genome shotgun bisulfite sequencing	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE10967	Highly integrated epigenome maps in Arabidopsis - small RNA sequencing	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE10968	Highly integrated epigenome maps in Arabidopsis - transcriptome sequencing	Expression profiling by high throughput sequencing	Arabidopsis thaliana	4	TXT SRA Run Selector	Joseph R Ecker	Apr 21, 2008
GSE10969	Highly integrated epigenome maps in Arabidopsis - methylcytosine immunoprecipitation	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	4	CEL TXT	Joseph R Ecker	Apr 21, 2008
GSE11070	A link between RNA metabolism and silencing affecting Arabidopsis development	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by genome tiling array	Arabidopsis thaliana	22	CEL TXT SRA Run Selector	Joseph R Ecker	May 15, 2008
GSE34654	Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana.	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	16	SAM SRA Run Selector	Joseph R Ecker	May 03, 2012
GSE43857	Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (Methyl-Seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	927	TSV SRA Run Selector	Joseph R Ecker	Mar 05, 2013
GSE43858	Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (RNA-Seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	144	TSV SRA Run Selector	Joseph R Ecker	Mar 05, 2013
GSE41753	Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Glycine max	97	TSV TXT SRA Run Selector	Joseph R Ecker	Jun 04, 2013
GSE47966	Global epigenomic reconfiguration during mammalian brain development	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	65	BAM TXT SRA Run Selector	Joseph R Ecker	Jul 03, 2013
GSE43463	Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants (RNA-seq)	Expression profiling by high throughput sequencing	Glycine max	24	TXT SRA Run Selector	Joseph R Ecker	Jan 08, 2014
GSE57179	Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms	Methylation profiling by high throughput sequencing	Homo sapiens	11	TSV SRA Run Selector	Joseph R Ecker	Jul 02, 2014
GSE59696	The developmental potential of iPSCs is greatly influenced by the selection of the reprogramming factors	Methylation profiling by high throughput sequencing	Mus musculus	10	TSV SRA Run Selector	Joseph R Ecker	Jul 30, 2014
GSE68193	Cryptochromes interact directly with PIFs to control plant growth in limiting blue light	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	13	BED SRA Run Selector	Joseph R Ecker	Dec 31, 2015
GSE79708	Unique cell-type specific patterns of DNA methylation in the root meristem (MethylC-seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	9	TSV SRA Run Selector	Joseph R Ecker	Mar 31, 2016
GSE79709	Unique cell-type specific patterns of DNA methylation in the root meristem (RNA-seq)	Expression profiling by high throughput sequencing	Arabidopsis thaliana	6	TSV SRA Run Selector	Joseph R Ecker	Mar 31, 2016
GSE79710	Unique cell-type specific patterns of DNA methylation in the root meristem	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	15	TSV	Joseph R Ecker	Mar 31, 2016
GSE60141	A Comprehensive Atlas of Arabidopsis Regulatory DNA [DAP-seq]	Other	Arabidopsis thaliana Zea mays	936	NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016
GSE60142	The DNA affinity purification DAP-Seq assay [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016