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15 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter							Ryan Lister
GSE241460	A modular dCas9-based recruitment platform for combinatorial epigenome editing	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	23		BED BEDGRAPH BW	Ryan Lister	Nov 02, 2023
GSE246103	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [scRNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	2		H5 TAR	Ryan Lister	Oct 25, 2023
GSE159114	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	12		TXT SRA Run Selector	Ryan Lister	Aug 11, 2023
GSE159296	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS]	Methylation profiling by high throughput sequencing	Homo sapiens	48		CGMAP SRA Run Selector	Ryan Lister	Aug 11, 2023
GSE159297	Transient naive reprogramming corrects hiPS cells functionally and epigenetically	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	110		BIGWIG CGMAP H5 TAR	Ryan Lister	Aug 11, 2023
GSE159718	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22		BIGWIG BW SRA Run Selector	Ryan Lister	Aug 11, 2023
GSE160933	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS 2]	Methylation profiling by high throughput sequencing	Homo sapiens	21		CGMAP SRA Run Selector	Ryan Lister	Aug 11, 2023
GSE178779	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12		BIGWIG SRA Run Selector	Ryan Lister	Aug 11, 2023
GSE239579	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ONT DNA-seq]	Other	Homo sapiens	6		TAR	Ryan Lister	Aug 11, 2023
GSE137098	Embryonic stem cell-derived neurons as a model system for epigenome maturation during development	Methylation profiling by high throughput sequencing Third-party reanalysis Expression profiling by high throughput sequencing	Mus musculus	53		BIGWIG GTF TXT SRA Run Selector	Ryan Lister	Jul 25, 2023
GSE168408	Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	49		CSV H5 TBI TSV SRA Run Selector	Ryan Lister	Oct 31, 2022
GSE165891	Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	57		CGMAP NARROWPEAK TSV SRA Run Selector	Ryan Lister	Jul 04, 2022
GSE198394	An environmentally-responsive transcriptional state modulates cell identities during root development	Expression profiling by high throughput sequencing	Arabidopsis thaliana	14		RDS	Ryan Lister	Mar 16, 2022
GSE141609	Evolution of CpH methylation in vertebrate brains	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Branchiostoma lanceolatum Callorhinchus milii Danio rerio Gallus gallus Lethenteron camtschaticum Monodelphis domestica Octopus bimaculoides Ornithorhynchus anatinus	11		CGMAP TSV SRA Run Selector	Ryan Lister	Oct 26, 2020
GSE101905	Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	85		BED BIGWIG TXT XLSX SRA Run Selector	Ryan Lister	Dec 06, 2017