GEO Browser - GEO

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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter						Federico Zambelli
GSE86511	Genome-wide chromatin binding of MYC, Omomyc, RNA polymerase II (Pol II), and Pol II Ser-2p in human glioblastoma cells and glioblastoma stem cells expressing or not Omomyc	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BIGWIG SRA Run Selector	Federico Zambelli	Nov 16, 2016
GSE86518	Genome-wide mRNA expression in human glioblastoma cells and glioblastoma stem cells expressing or not Omomyc	Expression profiling by high throughput sequencing	Homo sapiens	29	TXT SRA Run Selector	Federico Zambelli	Nov 16, 2016
GSE86519	Resetting cancer stem cell regulatory nodes upon MYC inhibition	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	50	BIGWIG	Federico Zambelli	Nov 16, 2016
GSE90557	Genome-wide maps of chromatin state in neural stem/progenitor cells (NSC) from mouse neonatal forebrain [ChIA-PET]	Other	Mus musculus	5	BEDPE TXT SRA Run Selector	Federico Zambelli	Mar 07, 2019
GSE90558	Genome-wide maps of chromatin state in neural stem/progenitor cells (NSC) from mouse neonatal forebrain [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED SRA Run Selector	Federico Zambelli	Mar 07, 2019
GSE90559	Sox2 is required for global chromatin interactions in brain-derived neural stem cells [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TXT SRA Run Selector	Federico Zambelli	Mar 07, 2019
GSE90560	Next Generation Sequencing of polyA+ RNA of cultured neural stem/progenitor cells (NSC) from mouse neonatal forebrain [RNA-seq]	Expression profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	Federico Zambelli	Mar 07, 2019
GSE90561	Sox2 is required for functional chromatin connectivity in brain-derived neural stem cells.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BEDPE TXT	Federico Zambelli	Mar 07, 2019
GSE108193	RNA-seq WT and nhp6ab	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	XLSX SRA Run Selector	Federico Zambelli	Oct 02, 2019
GSE108217	Genome wide analysis of H4K16Ac distribution in WT and nhp6ab cells	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	TXT SRA Run Selector	Federico Zambelli	Oct 02, 2019
GSE108219	WT and nhp6ab	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8		Federico Zambelli	Oct 02, 2019
GSE111190	4Cseq analysis of neural stem/progenitor cells (NSC) from wild type and Sox2-deleted mouse neonatal forebrain	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	46	BEDGRAPH SRA Run Selector	Federico Zambelli	Mar 07, 2019
GSE128002	Response to extended drought stress and recovery involve epigenetic control of stress adaptation and flowering regulation in Zea mays	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	13	TXT SRA Run Selector	Federico Zambelli	Oct 02, 2019
GSE157704	Methylation pattern profile of mouse embryonic stem cells upon knockdown of YAP, during neuroectodermal differentiation	Methylation profiling by high throughput sequencing	Mus musculus	8	XLSX SRA Run Selector	Federico Zambelli	Dec 08, 2020
GSE157705	Genome-wide maps of YAP target chromatin loci in mouse pluripotent stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TXT SRA Run Selector	Federico Zambelli	Dec 08, 2020
GSE157706	Expression profile of mouse embryonic stem cells upon knockdown or overexpression of YAP	Expression profiling by high throughput sequencing	Mus musculus	12	TXT XLSX SRA Run Selector	Federico Zambelli	Dec 08, 2020
GSE157707	YAP contributes to DNA methylation remodeling upon mouse embryonic stem cell differentiation	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	24	TXT	Federico Zambelli	Dec 08, 2020
GSE205271	Perturbation of protein homeostasis brings plastids at the crossroad between repairment and dismantling	Expression profiling by high throughput sequencing	Arabidopsis thaliana	20	XLSX	Federico Zambelli	May 26, 2023
GSE211960	Effect of hPNPase on Escherichia coli transcritome	Expression profiling by high throughput sequencing	Escherichia coli	9	TXT	Federico Zambelli	Aug 08, 2023
GSE221825	Effect of hPNPase on Escherichia coli transcritome after addition of rifampicin	Expression profiling by high throughput sequencing	Escherichia coli	24	TXT	Federico Zambelli	Aug 08, 2023