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228 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BAM
GSE33222	Heat stress effects on gene expression in the grape berry. Comparison of pre- and post-véraison berries and microarray versus mRNA-seq datasets.	Expression profiling by high throughput sequencing	Vitis vinifera	8	BAM TAB SRA Run Selector	Mark Raymond Thomas	Nov 22, 2018
GSE33386	Unique mRNA expressed during grapevine floral development	Expression profiling by high throughput sequencing	Vitis vinifera	11	BAM TAB SRA Run Selector	Mark Raymond Thomas	Nov 22, 2018
GSE109560	Transcriptome-wide view of endosomal mRNP transport [RNA-Seq]	Other	Ustilago maydis	6	BAM SRA Run Selector	Kathi Zarnack	Dec 10, 2018
GSE109561	Transcriptome-wide view of endosomal mRNP transport	Other Expression profiling by high throughput sequencing	Ustilago maydis	12	BAM BW	Kathi Zarnack	Dec 10, 2018
GSE175668	Diagnosis of Taenia solium infections based on “mail order” RNA-sequencing of single tapeworm egg isolates from stool samples	Expression profiling by high throughput sequencing Other	Taenia solium	3	BAM TAB SRA Run Selector	Markus Schuelke	Nov 06, 2021
GSE63473	Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets	Expression profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	203	BAM FASTA GTF TXT	Evan Macosko	May 20, 2015
GSE66694	Drop-Seq analysis of ERCC spike in capture	Expression profiling by high throughput sequencing Other	synthetic construct	1	BAM FASTA GTF TXT SRA Run Selector	Evan Macosko	May 20, 2015
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Sus scrofa Mus musculus Homo sapiens	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE33668	Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development	Expression profiling by high throughput sequencing	Sordaria macrospora	8	BAM TXT SRA Run Selector	Minou Nowrousian	Oct 01, 2012
GSE28113	Programmed fluctuations in sense/anti-sense transcript ratios drive sexual differentiation in Schizosaccharomyces pombe	Expression profiling by high throughput sequencing	Schizosaccharomyces pombe	19	BAM	Danny Asher Bitton	Dec 20, 2011
GSE28298	Tripartite organization of centromeric chromatin in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	28	BAM PDF SAM WIG	Jorja Henikoff	Dec 07, 2011
GSE29122	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (mRNA-Seq data)	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM SRA Run Selector	Jacques Rougemont	Jul 01, 2011
GSE29124	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (ChIP-Seq data)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	9	BAM BIGWIG SRA Run Selector	Jacques Rougemont	Jul 01, 2011
GSE29125	Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	25	BAM BIGWIG	Jacques Rougemont	Jul 01, 2011
GSE116337	Nucleosome position mapping by micrococcal nuclease analysis of S. cerevisiae cells in raffinose and galactose containing media	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	BAM SRA Run Selector	Tineke Lenstra	May 14, 2019
GSE168700	A hexasome is the preferred substrate for the INO80 chromatin remodeling complex allowing versatility of function	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	BAM SRA Run Selector	Vijay Ramani	Jan 01, 2022
GSE173534	ChIPseq experiments for chromatin modification in S.cerevisiae upon truncations of CTR9	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	28	BAM SRA Run Selector	Stephen Buratowski	Apr 29, 2021
GSE189063	A transcriptional roadblock protects yeast centromeres	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	16	BAM BW TSV SRA Run Selector	Glennis Amelia Logsdon	Feb 07, 2022
GSE243114	A bioinformatic pipeline for analysis of M.EcoGII methylation footprint PacBio long-read sequence data	Other	Saccharomyces cerevisiae Escherichia coli	12	BAM BED BIGWIG	David Clark	Mar 15, 2024
GSE141290	Pervasive promoter-proximal regulation in archaea	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Saccharolobus solfataricus P2 Saccharolobus solfataricus	84	BAM BW	Finn Werner	Sep 14, 2020