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19520 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BED
GSE196450	Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors	Expression profiling by high throughput sequencing Other	Homo sapiens	126	BED BW HIC TXT	Ryuichiro Nakato	Jul 28, 2023
GSE160087	Chromatin landscape associated with sexual differentiation in a UV sex determination system	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Ectocarpus sp. Ec457 Ectocarpus sp. Ec460	44	BED BW TAB SRA Run Selector	Olivier GODFROY	Mar 21, 2022
GSE244840	Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED BW	Wilbert Zwart	Mar 27, 2024
GSE71780	Functional interdependency of BRD4 and DOT1L in MLL leukaemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	33	BED	Mark Dawson	Jun 12, 2016
GSE185066	Local euchromatin enrichment in lamina-associated domains anticipates their re-positioning in the adipogenic lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	82	BED BEDGRAPH BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Philippe Collas	Mar 21, 2022
GSE73783	Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BED SRA Run Selector	Joanna Achinger-Kawecka	Apr 04, 2016
GSE73782	Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations [Hi-C]	Other	Homo sapiens	13	BED TXT SRA Run Selector	Joanna Achinger-Kawecka	Apr 04, 2016
GSE34791	"Calling Cards" for DNA-binding proteins in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED TXT SRA Run Selector	David Mayhew	Dec 31, 2011
GSE118076	(Epi)genetic regulation of zebrafish intestinal development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	24	BED TXT SRA Run Selector	Leonie M Kamminga	Oct 24, 2018
GSE69180	1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium Regulating Components	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BED BEDGRAPH TXT	Mark B Meyer	Jun 03, 2015
GSE69179	1,25-Dihydroxyvitamin D3 Controls a Cohort of Vitamin D Receptor Target Genes in the Proximal Intestine That Is Enriched for Calcium Regulating Components (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED BEDGRAPH SRA Run Selector	Mark B Meyer	Jun 03, 2015
GSE232895	27 Hydroxycholesterol represses G9a expression via Estrogen Receptor alpha in breast cancer	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BED	Arumugam Rajavelu	Sep 21, 2023
GSE61508	293T cells transfected with HIV-1 proviral plasmids	Other	Homo sapiens	2	BED SRA Run Selector	Sebla Bulent Kutluay	Nov 12, 2014
GSE33923	2C::tomato ES cells, 2-cell embryos and wild type oocytes	Expression profiling by high throughput sequencing	Mus musculus	16	BED CEL	Todd Macfarlan	Jun 18, 2012
GSE146738	3'GAmES: Systematic refinement of gene termini by mRNA 3' end sequencing	Other	Danio rerio	1	BED TXT SRA Run Selector	Stefan Ludwig Ameres	Mar 11, 2020
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE76363	3D chromosomal capture of X. laevis	Other	Xenopus laevis	4	BED SRA Run Selector	Ian K Quigley	Dec 29, 2015
GSE136090	3D genome landscapes of primary effusion lymphoma cell lines link super-enhancers to dependency factors	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	17	BED TXT SRA Run Selector	Mingxiang Teng	Oct 06, 2020
GSE228930	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [MEC_Omni-C]	Other	Mus musculus	6	BED MTX	Gordon K Smyth	Sep 08, 2023
GSE228954	3D genome organization coordinates key regulators of lineage specification in mammary epithelial cells [T8_Omni-C]	Other	Mus musculus	6	BED MTX	Gordon K Smyth	Sep 08, 2023