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16 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter						BED	Kornelia Polyak
GSE25292	Altered antisense-to-sense transcript ratios in breast cancer	Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	28		BED TXT	Kornelia Polyak	Dec 10, 2010
GSE25932	Altered antisense-to-sense transcript ratios in breast cancer: ASSAGE	Expression profiling by high throughput sequencing	Homo sapiens	3		BED SRA Run Selector	Kornelia Polyak	Dec 10, 2010
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by SNP array Methylation profiling by array Methylation profiling by genome tiling array	Homo sapiens	106		BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE46073	Gene expression and genome-wide location analysis of breast cancer cell-lines	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	41		BED TXT	Kornelia Polyak	Jun 17, 2014
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	333		BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018
GSE113909	Myoepithelial cell perturbations in BRCA mutation carriers and in DCIS (ductal carcinoma in situ)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	54		BED NARROWPEAK TSV SRA Run Selector	Kornelia Polyak	Aug 20, 2019
GSE120957	The EN1 transcription factor drives neural features and brain metastases in triple negative breats cancer (TNBC)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	89		BED CSV SRA Run Selector	Kornelia Polyak	Aug 22, 2019
GSE131102	Synthetic lethal and resistance interactions with BET bromodomain inhibitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	210		BED BW NARROWPEAK TXT	Kornelia Polyak	Mar 30, 2020
GSE251835	Midkine as a driver of age-related changes and increase in mammary tumorigenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	43		BED CSV MTX TSV	Kornelia Polyak	Aug 22, 2024
GSE38788	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6		BED SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE38789	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9		BED PROBSCOREISLAND SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE46055	Genome-wide location analysis in breast cancer cell-lines	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24		BED SRA Run Selector	Kornelia Polyak	Jun 17, 2014
GSE104983	KDM5B links cellular transcriptome heterogeneity to therapy resistance (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	171		BED BROADPEAK BW NARROWPEAK SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE131026	Synthetic lethal and resistance interactions with BET bromodomain inhibitors [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16		BED BW SRA Run Selector	Kornelia Polyak	Mar 30, 2020
GSE251833	Midkine as a driver of age-related changes and increase in mammary tumorigenesis [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	8		BED CSV TSV	Kornelia Polyak	Aug 22, 2024
GSE104986	KDM5B links cellular transcriptome heterogeneity to therapy resistance (RRBS)	Methylation profiling by high throughput sequencing	Homo sapiens	10		BED SRA Run Selector	Kornelia Polyak	Oct 03, 2018