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17289 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BIGWIG
GSE205783	Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	170	BEDGRAPH BIGWIG COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Apr 28, 2023
GSE90599	Che-1 sustains hypoxic response of colorectal cancer cells by affecting Hif-1α stabilization	Expression profiling by high throughput sequencing	Homo sapiens	4	BIGWIG TSV SRA Run Selector	Matteo Pallocca	Jun 12, 2017
GSE110282	2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) Alters Hepatic Polyunsaturated Fatty Acid Metabolism and Eicosanoid Biosynthesis in Female Sprague-Dawley Rats [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	10	BIGWIG SRA Run Selector	Timothy Zacharewski	Dec 01, 2018
GSE212882	5-Hydroxymethylcytosine Profiling of Cell-Free DNA Identifies Bivalent Genes That Are Prognostic of Survival in High-Risk Neuroblastoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	148	BIGWIG TXT	Mark Applebaum	Feb 01, 2024
GSE212874	5-Hydroxymethylcytosine Profiling of Cell-Free DNA Identifies Bivalent Genes That Are Prognostic of Survival in High-Risk Neuroblastoma [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	96	BIGWIG	Mark Applebaum	Feb 01, 2024
GSE212881	5-Hydroxymethylcytosine Profiling of Cell-Free DNA Identifies Bivalent Genes That Are Prognostic of Survival in High-Risk Neuroblastoma [KAS-Seq]	Other	Homo sapiens	16	BIGWIG	Mark Applebaum	Feb 01, 2024
GSE63058	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by SNP array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	139	BIGBED BIGWIG CEL CYCHP	Giuseppe Testa	Dec 15, 2014
GSE63057	7q11.23 dosage-dependent dysregulation in the human pluripotent state primes aberrant transcriptional programs in disease-relevant lineages (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BIGBED BIGWIG SRA Run Selector	Giuseppe Testa	Dec 15, 2014
GSE144147	A Balance Between Intermediate Filaments and Microtubules Maintains Nuclear Architecture in the Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	28	BED BIGWIG XLS SRA Run Selector	Julie Heffler	Jan 24, 2020
GSE102590	A Cdk9-PP1 switch regulates the elongation-termination transition of RNA polymerase II	Other Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	52	BEDGRAPH BIGWIG BW SRA Run Selector	Robert P Fisher	Jun 07, 2018
GSE149268	A Chromatin Accessibility Atlas of the Developing Human Telencephalon	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BED BIGWIG NARROWPEAK	John Rubenstein	Apr 25, 2020
GSE66298	A DNA Hypomethylation Signature Predicts Novel Anti-Tumor Activity of LSD1 Inhibitors in SCLC	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array	Homo sapiens	136	BIGWIG CEL IDAT TXT	David Soong	Jul 14, 2015
GSE66297	A DNA Hypomethylation Signature Predicts Novel Anti-Tumor Activity of LSD1 Inhibitors in SCLC (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BIGWIG TXT SRA Run Selector	David Soong	Jul 14, 2015
GSE124197	A Genome-wide CRISPR-Based Screen Identifies KAT7 as a Senescence Driver	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	71	BED BIGWIG TXT SRA Run Selector	Yuxuan Zheng	Oct 09, 2020
GSE143603	A Light-Inducible Strain for Genome-Wide Histone Turnover Profiling in Neurospora crassa	Genome binding/occupancy profiling by high throughput sequencing	Neurospora crassa	10	BED BIGWIG SRA Run Selector	Eric U Selker	Jan 01, 2021
GSE77291	A NOVEL EPIGENETIC SILENCING PATHWAY INVOLVING the HIGHLY CONSERVED 5'-3' EXORIBONUCLEASE Dhp1/Rat1/Xrn2 in SCHIZOSACCHAROMYCES POMBE	Expression profiling by array Other	Schizosaccharomyces pombe	8	BEDGRAPH BIGWIG TXT	Tamas Fischer	Jan 28, 2016
GSE77290	A NOVEL EPIGENETIC SILENCING PATHWAY INVOLVING the HIGHLY CONSERVED 5'-3' EXORIBONUCLEASE Dhp1/Rat1/Xrn2 in SCHIZOSACCHAROMYCES POMBE [CRAC-seq]	Other	Schizosaccharomyces pombe	5	BIGWIG SRA Run Selector	Tamas Fischer	Jan 28, 2016
GSE104690	A Non-canonical BCOR-PRC1.1 Complex Represses Differentiation Programs in Human ESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	42	BIGWIG BROADPEAK CSV SRA Run Selector	Micah Gearhart	Jan 11, 2018
GSE109690	A Nucleosome Destabilizing Factor that Facilitates Transcription in Chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	28	BED BIGWIG BW TXT SRA Run Selector	Jia Fei	Apr 16, 2018
GSE130041	A Pandas complex adapted for piRNA-guided transposon silencing (CLIP-seq)	Other	Drosophila melanogaster	4	BIGWIG SRA Run Selector	Ming Wang	Aug 09, 2019