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21 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					BW	Kornelia Polyak
GSE229426	Combination therapies to improve the efficacy of immunotherapy in triple-negative breast cancer [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BW	Kornelia Polyak	Aug 15, 2023
GSE163360	JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BW SRA Run Selector	Kornelia Polyak	Nov 02, 2022
GSE131026	Synthetic lethal and resistance interactions with BET bromodomain inhibitors [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED BW SRA Run Selector	Kornelia Polyak	Mar 30, 2020
GSE69112	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer [ChIP-Seq 3]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	23	BW SRA Run Selector	Kornelia Polyak	Jun 10, 2015
GSE202772	Epigenetic heterogeneity and transcriptional drivers of triple-negative breast cancer (PDX H3K27ac ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	BW NARROWPEAK	Kornelia Polyak	Nov 09, 2023
GSE249459	Cancer-stromal cell interactions in breast cancer brain metastases induce glycocalyx-mediated resistance to HER2-targeting therapies [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	24	BW	Kornelia Polyak	Apr 24, 2024
GSE202767	Epigenetic heterogeneity and transcriptional drivers of triple-negative breast cancer (PRRX1 ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	31	BW NARROWPEAK	Kornelia Polyak	Nov 09, 2023
GSE229428	Combination therapies to improve the efficacy of immunotherapy in triple-negative breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	34	BW	Kornelia Polyak	Aug 15, 2023
GSE259248	ZBTB7A is a modulator of KDM5-driven transcriptional networks in basal breast cancer (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	36	BW NARROWPEAK	Kornelia Polyak	Oct 14, 2024
GSE237390	Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	54	BW	Kornelia Polyak	Apr 24, 2024
GSE202766	Epigenetic heterogeneity and transcriptional drivers of triple-negative breast cancer (H3K27ac cell lines ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	60	BW NARROWPEAK	Kornelia Polyak	Nov 09, 2023
GSE131097	Synthetic lethal and resistance interactions with BET bromodomain inhibitors [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	61	BW NARROWPEAK SRA Run Selector	Kornelia Polyak	Mar 30, 2020
GSE249574	Cancer-stromal cell interactions in breast cancer brain metastases induce glycocalyx-mediated resistance to HER2-targeting therapies	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	64	BW	Kornelia Polyak	Apr 24, 2024
GSE237392	Loss of Kmt2c or Kmt2d drives brain metastasis via KDM6A-dependent upregulation of MMP3	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	81	BW	Kornelia Polyak	Apr 24, 2024
GSE259252	ZBTB7A is a modulator of KDM5-driven transcriptional networks in basal breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	103	BW H5 NARROWPEAK	Kornelia Polyak	Oct 14, 2024
GSE38548	Somatic cell fusions reveal extensive heterogeneity in basal-like breast cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by array Genome variation profiling by SNP array Methylation profiling by genome tiling array	Homo sapiens	106	BED BW CEL FPKM_TRACKING PROBSCOREISLAND TXT	Kornelia Polyak	Jun 09, 2015
GSE163397	JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	131	BW	Kornelia Polyak	Nov 02, 2022
GSE104983	KDM5B links cellular transcriptome heterogeneity to therapy resistance (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	171	BED BROADPEAK BW NARROWPEAK SRA Run Selector	Kornelia Polyak	Oct 03, 2018
GSE131102	Synthetic lethal and resistance interactions with BET bromodomain inhibitors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	210	BED BW NARROWPEAK TXT	Kornelia Polyak	Mar 30, 2020
GSE104988	KDM5B links cellular transcriptome heterogeneity to therapy resistance	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	333	BED BROADPEAK BW NARROWPEAK TSV TXT	Kornelia Polyak	Oct 03, 2018