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11782 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
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GSE219052	Influence of Sox4 on chromatin accessibility of adult hepatocytes [EV and Sox4]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BW XLS	Takeshi Katsuda	Nov 28, 2023
GSE221223	Profiling Sox4 binding sites and histone post-translational modifications in adult hepatocytes (CUT&RUN I)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED BW	Takeshi Katsuda	Nov 28, 2023
GSE221224	Profiling Sox4 binding sites and histone post-translational modifications in adult hepatocytes (CUT&RUN II)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED BW	Takeshi Katsuda	Nov 28, 2023
GSE224916	Contrasting effects of whole-body and hepatocyte-specific deletion of the RNA polymerase III repressor Maf1 in the mouse [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BW	Gilles Willemin	Nov 28, 2023
GSE224917	Contrasting effects of whole-body and hepatocyte-specific deletion of the RNA polymerase III repressor Maf1 in the mouse	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	59	BW	Gilles Willemin	Nov 28, 2023
GSE231564	Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation [bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BW	Jonathan Cahn	Nov 27, 2023
GSE247048	Highly cooperative chimeric super-SOX induces naïve pluripotency across species [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BW	Sergiy Velychko	Nov 27, 2023
GSE247051	Highly cooperative chimeric super-SOX induces naïve pluripotency across species	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	84	BED BW	Sergiy Velychko	Nov 27, 2023
GSE247469	SIRT1 prevents R-loops during chronological aging by modulating DNA replication at rDNA loci	Other	Homo sapiens	33	BROADPEAK BW	Christophe E Redon	Nov 27, 2023
GSE248360	The Rtf1/Prf1-dependent histone modification axis and Rpb1 C-terminal domain phosphorylation counteract multi-drug resistance in fission yeast [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	64	BW	Jason Tanny	Nov 27, 2023
GSE248243	ChIP-seq following AATF in BIU-87 cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BW	Shutao Tan	Nov 25, 2023
GSE181571	Increased DNA replication length offsets developmental defects induced by hypomorphic DNA methylcytosine methyltransferase activity [RNA-Seq]	Expression profiling by high throughput sequencing	Danio rerio	40	BW TSV SRA Run Selector	Pierre Daniel Cauchy	Nov 24, 2023
GSE181572	Increased DNA replication length offsets developmental defects induced by hypomorphic DNA methylcytosine methyltransferase activity [Bisulfite-Seq]	Methylation profiling by high throughput sequencing	Danio rerio	36	BW SRA Run Selector	Pierre Daniel Cauchy	Nov 24, 2023
GSE181573	Increased DNA replication length offsets developmental defects induced by hypomorphic DNA methylcytosine methyltransferase activity	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio	76	BW	Pierre Daniel Cauchy	Nov 24, 2023
GSE220644	In vitro reconstitution of chromatin domains (Mnase-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	26	BW	Elisa Oberbeckmann	Nov 24, 2023
GSE211180	Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network [PRO-seq]	Expression profiling by high throughput sequencing Other	Drosophila melanogaster	16	BW	Mattias Mannervik	Nov 23, 2023
GSE211219	Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	12	BW	Mattias Mannervik	Nov 23, 2023
GSE211220	Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	115	BW	Mattias Mannervik	Nov 23, 2023
GSE211383	Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network [CUT&TAG]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	60	BW	Mattias Mannervik	Nov 23, 2023
GSE211663	Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	27	BW	Mattias Mannervik	Nov 23, 2023