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975 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					HIC
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE113256	Aedes aegypti strain:LVP_AGWG (yellow fever mosquito)	Other	Aedes aegypti	3	BED FASTA HIC TXT SRA Run Selector	Olga Dudchenko	Aug 23, 2018
GSE243024	Discovery of chromosomal inversions in the mosquito Aedes aegypti	Other	Aedes aegypti Aedes mascarensis	26	HIC TXT	Maria Sharakhova	Sep 06, 2024
GSE155503	DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	50	BW HIC SRA Run Selector	Zhenhui Zhong	Jan 25, 2021
GSE160412	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats (Hi-C)	Other	Arabidopsis thaliana	6	HIC TXT SRA Run Selector	Fredy BARNECHE	Sep 10, 2023
GSE160414	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	51	BIGWIG BW HIC TXT	Fredy BARNECHE	Sep 10, 2023
GSE201839	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [Hi-C]	Other	Arabidopsis thaliana	3	HIC TSV	Márton Miskei	Aug 09, 2022
GSE201841	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana	30	BW HIC	Márton Miskei	Aug 09, 2022
GSE245010	The landscape of the histone-organized chromatin of Bdellovibrionota bacteria	Genome binding/occupancy profiling by high throughput sequencing Other	Bdellovibrio bacteriovorus	27	BIGWIG HIC	Georgi Kolev Marinov	Dec 06, 2023
GSE181751	The chromatin organization of a chlorarachniophyte nucleomorph genome	Genome binding/occupancy profiling by high throughput sequencing Other	Bigelowiella natans	5	BIGWIG HIC SRA Run Selector	Georgi Kolev Marinov	Jan 25, 2022
GSE268050	Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample	Other Third-party reanalysis	Bos taurus Elephas maximus indicus Equus asinus Homo sapiens Mammuthus primigenius	136	BED BEDGRAPH BEDPE FASTA HIC SW TXT XLSX	Olga Dudchenko	May 22, 2024
GSE153950	Transcription-dependent domain-scale 3D genome organization in dinoflagellates	Other	Breviolum minutum	35	HIC SRA Run Selector	Georgi Kolev Marinov	Jul 08, 2020
GSE188851	Topoisomerases I and II facilitate the translocation of condensin DC in C. elegans	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Caenorhabditis briggsae Caenorhabditis elegans	147	BW HIC TAB	Ana Karina Morao	Nov 16, 2021
GSE132640	SIP Identifies a Network of Dosage Compensation Condensin I Loops	Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	5	HIC SRA Run Selector	M Jordan Rowley	Feb 04, 2020
GSE168803	Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Caenorhabditis elegans	150	BEDGRAPH BW HIC TXT	Jun Kim	Mar 23, 2021
GSE169456	Mobility of condensin DC is key to its function in repressing transcription [Hi-C]	Other	Caenorhabditis elegans	4	BEDGRAPH HIC SRA Run Selector	Jun Kim	Sep 22, 2021
GSE169458	Mobility of condensin DC is key to its function in repressing transcription	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	63	BW HIC TXT	Jun Kim	Sep 22, 2021
GSE169468	Condensin DC spreads linearly and bidirectionally from recruitment sites to create loop-anchored TADs in C. elegans (Hi-C)	Other	Caenorhabditis elegans	14	BEDGRAPH HIC SRA Run Selector	Jun Kim	Mar 24, 2021
GSE188849	Topoisomerases I and II facilitate the translocation of condensin DC in C. elegans [HiC]	Other	Caenorhabditis elegans	4	HIC SRA Run Selector	Ana Karina Morao	Nov 16, 2021
GSE203533	Topoisomerases I and II facilitate the translocation of condensin DC in C. elegans [Hi-C]	Other	Caenorhabditis elegans	2	HIC	Ana Karina Morao	May 23, 2022