GEO Browser - GEO

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156 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					MCOOL
GSE123245	Setdb1 regulates Cohesin at H3K9me3-independent topological domains	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH HIC MCOOL TXT	Chadi El Farran	Dec 01, 2020
GSE131784	Spen regulates X chromosome inactivation	Expression profiling by high throughput sequencing Other	Mus musculus	73	BW MCOOL TXT	samuel Collombet	Dec 08, 2019
GSE143852	Smc3 regulates B-cell transit through germinal centers and restricts their malignant transformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	29	CSV MCOOL	Cem Meydan	Oct 13, 2020
GSE147123	Structural variants drive context dependent oncogene activation in cancer	Expression profiling by high throughput sequencing Other	Homo sapiens	164	BW HIC MCOOL TXT XLSX SRA Run Selector	Jesse R Dixon	Oct 04, 2022
GSE148079	Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	51	MCOOL NARROWPEAK TXT SRA Run Selector	Feng Yue	Jan 04, 2021
GSE152136	Subtype-Specific and Structure Variation-Induced Chromatin Spatial Reorganization in Acute Myeloid Leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	135	BIGWIG BW MCOOL PAIRS TXT	Feng Yue	Jul 19, 2022
GSE163729	BRD2 regulates accessible genome organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	97	BW HIC MCOOL XLSX SRA Run Selector	Robert Tjian	Feb 09, 2022
GSE165463	Human Core Nucleoporin Selectively Regulates Gene Transcription but is Dispensable for 3D Genome Organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	42	BEDPE BIGWIG MCOOL PAIRS SRA Run Selector	chuangye Qi	Sep 16, 2022
GSE168233	SETDB1 Fuels the Lung Cancer Phenotype by Modulating Epigenome, 3D Genome Organization, and Chromatin Mechanical Properties	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	40	BED BW MCOOL TXT SRA Run Selector	Mikhail Magnitov	Mar 29, 2022
GSE176196	Mod(mdg4) variants repress telomeric retrotransposon Het-A by blocking subtelomeric enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	44	BW MCOOL TXT SRA Run Selector	Chikara Takeuchi	Oct 20, 2022
GSE178348	TCF-1 mediates 3D genome reconfiguration during T cell development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	40	BED BW HIC MCOOL TXT	Wenliang Wang	Feb 24, 2022
GSE178982	Enhancer-promoter interactions and transcription are maintained upon acute loss of CTCF, cohesin, WAPL, and YY1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	173	BW MCOOL SRA Run Selector	Xavier Darzacq	Jul 15, 2021
GSE179184	Mapping the 3D genome and epigenome in SARS-CoV-2 infected human cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	65	BED BW MCOOL TSV SRA Run Selector	Ruoyu Wang	Jul 23, 2021
GSE181104	Rapid redistribution and extensive co-binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	128	BED BIGWIG BW MCOOL NARROWPEAK	Pedro P Rocha	Jul 29, 2021
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE191312	multi-omic analysis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BW CSV MCOOL MTX TSV	John James Tello-Cajiao	Apr 01, 2022
GSE194268	Loss of Cohesin regulator PDS5A reveals repressive role of Polycomb loops	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	115	BW CSV HIC MCOOL	Oliver Bell	Nov 10, 2023
GSE198181	A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination [Micro-C]	Expression profiling by high throughput sequencing	Mus musculus	2	MCOOL	Maximilian Christian von der Linde	Jan 20, 2023
GSE214707	Chromosome-level organization of the regulatory genome in the Drosophila nervous system	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Drosophila virilis	34	BED CSV H5 MCOOL TSV	Maria Cristina Gambetta	Aug 01, 2023
GSE214811	Stage-specific erythroid cell three-dimensional chromatin architecture and transcription factors binding provide insight of human erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	99	BEDGRAPH BIGWIG MCOOL MTX TAR TSV	Dong Li	May 06, 2023