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3417 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					NARROWPEAK
GSE93431	Two independent modes of chromosome organization are revealed by cohesin removal	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	32	BW CSV HDF5 NARROWPEAK TSV TXT SRA Run Selector	Nezar Abdennur	Jun 10, 2017
GSE109292	p53 binding and gene expression profiles in Drosophila postmitotic and embryonic tissue	Expression profiling by high throughput sequencing	Drosophila melanogaster	12	BW NARROWPEAK TXT SRA Run Selector	John M Abrams	Jul 15, 2019
GSE151013	Mechanistic dissection of dominant AIRE mutations in mouse models reveals evidence for AIRE auto-regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	BED BROADPEAK NARROWPEAK	Jakub Abramson	Aug 30, 2021
GSE165550	Mechanistic dissection of dominant AIRE mutations in mouse models reveals AIRE auto-regulation [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	NARROWPEAK SRA Run Selector	Jakub Abramson	Sep 01, 2021
GSE192875	Transcriptional regulation of the thymus master regulator Foxn1	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	72	BROADPEAK BW NARROWPEAK	Jakub Abramson	Aug 03, 2022
GSE204741	Transcriptional regulation of the thymus master regulator Foxn1 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	NARROWPEAK	Jakub Abramson	Aug 03, 2022
GSE171070	Epigenetic therapy suppresses tumour growth by rewiring ER-mediated long-range chromatin interactions in ER+ endocrine-resistant breast cancer [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	23	NARROWPEAK SRA Run Selector	Joanna Achinger-Kawecka	Dec 12, 2021
GSE171074	The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by array Other Methylation profiling by high throughput sequencing	Homo sapiens	88	BED BW HIC IDAT NARROWPEAK TXT	Joanna Achinger-Kawecka	Dec 12, 2021
GSE189944	Fine-tuned KDM1A alternative splicing regulates human cardiomyogenesis through an enzymatic-independent mechanism	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	68	NARROWPEAK XLSX SRA Run Selector	Antonio Adamo	Jul 01, 2022
GSE222087	Extensive diversity in RNA termination and regulation revealed by transcriptome mapping for the Lyme pathogen B. burgdorferi [3′RNA-seq]	Expression profiling by high throughput sequencing	Borreliella burgdorferi	6	NARROWPEAK	Philip Adams	May 26, 2023
GSE173201	Genomic characterization of cisplatin response uncovers priming of cispla-tin-induced genes in a resistant cell line	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BW CSV NARROWPEAK SRA Run Selector	Sheera Adar	Jun 07, 2021
GSE226013	Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization [CUT&Tag]	Other	Homo sapiens	5	BW NARROWPEAK	MAZHAR ADLI	Jun 16, 2023
GSE226017	Engineered MED12 mutations drive uterine fibroid-like transcriptional and metabolic programs by altering the 3D genome compartmentalization	Other Expression profiling by high throughput sequencing	Homo sapiens	27	BW HIC NARROWPEAK TXT	MAZHAR ADLI	Jun 16, 2023
GSE114557	cisTopic: cis-regulatory topic modelling on single-cell ATAC-seq data	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	771	BW NARROWPEAK TXT SRA Run Selector	Stein Aerts	Feb 18, 2019
GSE163697	Decoding gene regulation in the fly brain	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	58	BED BW GFF NARROWPEAK RDATA RDS SRA Run Selector	Stein Aerts	Aug 10, 2021
GSE166074	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [Cut&Run IFNgvsCtr]	Other	Mus musculus	21	BROADPEAK NARROWPEAK WIG SRA Run Selector	Eneritz Agirre	Jan 28, 2022
GSE121589	Dissecting the Individual and Collective Regenerative Behavior of Muscle Stem Cells During Aging	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	90	BIGWIG NARROWPEAK TAGALIGN TSV TXT SRA Run Selector	Carlos Aguilar	Aug 30, 2019
GSE131968	Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	20	BIGWIG NARROWPEAK TXT SRA Run Selector	Carlos Aguilar	May 31, 2019
GSE147672	Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	162	BED BIGWIG NARROWPEAK RDS TSV SRA Run Selector	Carlos Aguilar	Jul 26, 2020
GSE262348	NEMO Knockout Drives Variations in Gene Expression Regenerative Trajectory and Induces Chromatin Remodeling in murine muscle satellite cells during healing from traumatic injury	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BIGWIG NARROWPEAK TSV TXT	Carlos Aguilar	Apr 01, 2024