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2506 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					PAIR
GSE31407	Drosophila DrosDel deficiency and diploid control flies	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	203	BAM PAIR SAM	Brian Oliver	Apr 03, 2012
GSE31602	Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BEDGRAPH GFF PAIR PDF TXT WIG SRA Run Selector	Jorja Henikoff	Dec 05, 2011
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE51334	DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions	Other	Homo sapiens Mus musculus	993	BAM BED BIGWIG BROADPEAK NARROWPEAK PAIR TSV TXT	ENCODE DCC	Nov 20, 2014
GSE18457	ChIP-chip from HCT116 cells treated with MMS and LNCaP cells with ATF3	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Homo sapiens	10	BAR BED GFF PAIR PDF TXT XLS	Yujiro Tanaka	Oct 01, 2010
GSE28287	Plasmodium falciparum CNV-SNP chip optimization	Genome variation profiling by genome tiling array	Plasmodium falciparum	44	BASES PAIR	Michael Ferdig	Apr 01, 2011
GSE14603	Gene Body Hypermethylation of ATM in Peripheral Blood DNA of Bilateral Breast Cancer Patients	Methylation profiling by genome tiling array	Homo sapiens	14	BED GFF PAIR WIG	James Flanagan	Jan 29, 2009
GSE17051	Reorganization of nuclear lamina – genome interactions upon differentiation of embryonic stem cells.	Genome binding/occupancy profiling by genome tiling array	Mus musculus	8	BED PAIR TXT	Bas van Steensel	May 27, 2010
GSE17616	A map of open chromatin in human pancreatic islets	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	5	BED PAIR WIG SRA Run Selector	Kyle Jeffrie Gaulton	Jan 31, 2010
GSE19413	ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation	Genome binding/occupancy profiling by genome tiling array	Xenopus tropicalis	10	BED BEDGRAPH PAIR TXT ZIP	Gert Jan Veenstra	Dec 17, 2009
GSE22512	Analysis of Geobacter sulfurreducens under multiple growth conditions	Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Expression profiling by high throughput sequencing	Geobacter sulfurreducens PCA	29	BED PAIR WIG	Bernhard Palsson	Jul 01, 2010
GSE24420	Chip-chip from mouse olfactory epithelium (OE) and liver with antibodies against H3K9me3 and H4K20me3	Genome binding/occupancy profiling by genome tiling array	Mus musculus	12	BED PAIR TXT	Stavros Lomvardas	May 03, 2011
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010
GSE27215	IGH analysis in pro-B cells with H3K4me3, H3K4me2, H3K9ac, H3K27me3, Pax5 and CTCF	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED PAIR	Meinrad Busslinger	Feb 11, 2011
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE29064	Structural mapping of regulatory function of histone H3 and H4 residues	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Saccharomyces cerevisiae	135	BED PAIR TXT	Inkyung Jung	Dec 05, 2012
GSE30741	Kc cells from Drosophila melanogaster during ecdysone treatment and CP190 knockdown	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	26	BED PAIR WIG	Ashley M Wood	Oct 14, 2011
GSE30761	Mammalian X upregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Mus musculus Mus musculus x Mus spretus	60	BED BIGWIG CEL GFF PAIR TXT	Xinxian Deng	Jul 19, 2011
GSE31939	VDR/RXR and TCF4/beta-Catenin Cistromes in Colonic Cells of Colorectal Tumor Origin: Impact on c-FOS and c-MYC Gene Expression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	19	BED CALLS PAIR TIFF TXT SRA Run Selector	Mark B Meyer	Nov 22, 2011
GSE34941	Integrative Epigenomic Analysis Identifies Biomarkers and Therapeutic Targets in Adult B-Acute Lymphoblastic Leukemia	Expression profiling by array Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	428	BED BIGWIG PAIR	Huimin Geng	Nov 27, 2012