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1668 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
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GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE33222	Heat stress effects on gene expression in the grape berry. Comparison of pre- and post-véraison berries and microarray versus mRNA-seq datasets.	Expression profiling by high throughput sequencing	Vitis vinifera	8	BAM TAB SRA Run Selector	Mark Raymond Thomas	Nov 22, 2018
GSE33386	Unique mRNA expressed during grapevine floral development	Expression profiling by high throughput sequencing	Vitis vinifera	11	BAM TAB SRA Run Selector	Mark Raymond Thomas	Nov 22, 2018
GSE75419	The evolutionary dynamics of meiotic recombination initiation in mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	31	BAM BEDGRAPH TAB SRA Run Selector	Kevin Brick	Feb 03, 2016
GSE166483	Cataloging human PRDM9 variability utilizing long-read sequencing technologies reveals PRDM9 population-specificity and two distinct groupings of related alleles	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BAM BEDGRAPH BIGWIG TAB TXT SRA Run Selector	Kevin Brick	Oct 26, 2021
GSE175668	Diagnosis of Taenia solium infections based on “mail order” RNA-sequencing of single tapeworm egg isolates from stool samples	Expression profiling by high throughput sequencing Other	Taenia solium	3	BAM TAB SRA Run Selector	Markus Schuelke	Nov 06, 2021
GSE35857	Essential role of EBF1 in B cell immunity by controlling the generation and function of distinct mature B cell types	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	29	BED TAB SRA Run Selector	Meinrad Busslinger	Mar 20, 2012
GSE38148	The RNA Pol II Elongation Factor Ell3 Marks Enhancers in ES Cells and Primes Future Gene Activation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED TAB SRA Run Selector	Alexander (Garrett) Garruss	Dec 30, 2012
GSE41437	The viral and cellular microRNA targetome in lymphoblastoid cell lines	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	11	BED TAB SRA Run Selector	Rebecca L Skalsky	Oct 16, 2012
GSE41440	Enhancer-associated H3K4 mono-methylation by Drosophila Trithorax-related, the Drosophila homolog of Mll3/Mll4	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Mus musculus	45	BED TAB SRA Run Selector	Alexander (Garrett) Garruss	Dec 01, 2012
GSE42608	Whole-transcriptome high-throughput RNA sequencing of blood leukocytes from Parkinson's disease human patients pre- and post-deep brain stimulation	Expression profiling by high throughput sequencing	Homo sapiens	13	BED GFF3 TAB TXT SRA Run Selector	Lilach Soreq	Jul 16, 2014
GSE50676	Landscape and variation of RNA secondary structure across the human transcriptome	Expression profiling by high throughput sequencing Other	Homo sapiens	18	BED TAB TXT SRA Run Selector	Kun Qu	Dec 19, 2013
GSE53215	Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target [Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	16	BED TAB SRA Run Selector	Prasoon Agarwal	Dec 31, 2015
GSE62063	B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BW TAB WIG SRA Run Selector	Marei Dose	Dec 04, 2014
GSE67299	Frequent and Transient Acquisition of Pluripotency During Somatic Cell Trans-Differentiation with iPSCs Reprogramming Factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED TAB	Noa Novershtern	Apr 30, 2015
GSE69253	Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BED CEL TAB	Prasoon Agarwal	Dec 31, 2015
GSE76049	The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	98	BED TAB TXT	Rolf Ohlsson	Sep 30, 2019
GSE78040	Reversible methylation of m6Am in the 5′ cap controls mRNA stability	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	BED TAB TXT SRA Run Selector	Jan Mauer	Dec 21, 2016
GSE82310	Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to sea and freshwater conditions	Methylation profiling by high throughput sequencing	Gasterosteus aculeatus	12	BED TAB SRA Run Selector	Artem V Artemov	May 30, 2017
GSE84249	Adrenalectomy plus corticosterone treatment, rat hippocampal RNA-seq	Expression profiling by high throughput sequencing	Rattus norvegicus	12	BED TAB SRA Run Selector	Richard G. Hunter	Aug 11, 2016