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257 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					TBI
GSE199739	NuRD complex recruitment to Thpok mediates CD4+ T cell lineage differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BAI CSV H5 TBI TSV	Remy Bosselut	Jun 10, 2022
GSE212109	Epigenetic regulation of profibrotic macrophages in systemic sclerosis- associated interstitial lung disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BAI BED CSV H5 TBI TSV	Tracy Tabib	Sep 02, 2022
GSE123576	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [mouse brain]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123577	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [PBMC]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	6	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123578	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [Blood]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	28	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE123580	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [Bone marrow]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE141538	Zygotic pioneer factor activity of Odd-paired/Zic is necessary for establishing the Drosophila Segmentation Network	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	51	BED BEDGRAPH TBI TXT WIG SRA Run Selector	Shelby A Blythe	Feb 01, 2020
GSE141825	Single-cell ATAC-seq of mouse thymus iNKT cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Indra Adrianto	Jun 27, 2023
GSE142365	Single cell ATAC-seq of cardiomyocytes from neonatal mouse hearts after injury	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED CSV H5 MTX TBI TSV SRA Run Selector	Zhaoning Wang	Mar 18, 2020
GSE142366	Dynamic transcriptional responses to injury of regenerative and non-regenerative cardiomyocytes revealed by single-nucleus RNA sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	18	BED CSV H5 MTX TBI TSV	Zhaoning Wang	Mar 18, 2020
GSE145619	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Xenopus tropicalis	132	BED TAB TBI TSV SRA Run Selector	Ann Rose Bright	Dec 18, 2020
GSE148223	Marking the difference in acutely responding human CD8 T cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Silvia Asuncion Fuertes Marraco	May 05, 2022
GSE149622	Skin-resident innate lymphoid cells converge on a pathogenic effector state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED FA MTX TBI TSV SRA Run Selector	Elena Torlai Triglia	Dec 14, 2020
GSE153479	Single cell ATAC-seq of neonatal heart regeneration	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Zhaoning Wang	Dec 08, 2020
GSE157691	Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens	24	BED BEDGRAPH MTX TBI TSV	Sarah Sasse	Dec 29, 2020
GSE158196	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 TBI TSV SRA Run Selector	Danielle R. Little	Mar 08, 2021
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE161685	The IPF-associated variant in MUC5B, rs35705950, resides within an enhancer that is subject to lineage- and disease-dependent epigenetic remodeling	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED MTX RDS TBI TSV	Sarah Sasse	Dec 29, 2020
GSE162798	Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED CSV MTX TBI TSV TXT SRA Run Selector	Anil K Sood	Oct 20, 2021
GSE164068	Lamin A/C-dependent chromatin architecture safeguards naïve pluripotency to prevent aberrant cardiovascular cell fate and function [HiC-seq_ESC]	Other	Mus musculus	6	BED BEDGRAPH TBI TXT SRA Run Selector	Gergana Dobreva	Oct 11, 2022