GEO Browser - GEO

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264 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					TBI
GSE225554	A Cellular Atlas of the Down Syndrome Brain Identifies Accelerated Oligodendrocyte Precursor Cell Senescence	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	H5 MTX TBI TSV	Brian Kalish	Sep 14, 2023
GSE247692	A distinct human cell type expressing MHCII and RORγt with dual characteristics of dendritic cells and type 3 innate lymphoid cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	15	MTX TBI TSV	Alina Ulezko Antonova	Dec 19, 2023
GSE186458	A human DNA methylation atlas reveals principles of cell type-specific methylation and identifies thousands of cell type-specific regulatory elements	Methylation profiling by high throughput sequencing	Homo sapiens	253	BED BETA BIGWIG CSI PAT TBI	Tommy Kaplan	Mar 02, 2022
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023
GSE237724	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [ChIP-Seq 3]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDGRAPH TBI	Katia Georgopoulos	Nov 20, 2023
GSE232038	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [ChIP-seq HaCaT]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	BEDGRAPH TBI	Katia Georgopoulos	Nov 20, 2023
GSE232463	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [ChIP-seq LpreB cell]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	41	BEDGRAPH BW TBI	Katia Georgopoulos	Nov 20, 2023
GSE174405	A novel lineage of RORγt+ antigen presenting cells instructs microbiota-dependent regulatory T cell differentiation and tolerance during early life	Expression profiling by high throughput sequencing	Mus musculus	515	TBI TSV	Chrysothemis Brown	Sep 06, 2022
GSE205065	A novel lineage of RORγt+ antigen presenting cells instructs microbiota-dependent regulatory T cell differentiation and tolerance during early life [multiome scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TBI TSV	Chrysothemis Brown	Sep 06, 2022
GSE225716	A nucleosome switch primes Hepatitis B Virus infection	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Hepatitis B virus Homo sapiens	101	BEDGRAPH BW TBI	Andres Mansisidor	Mar 03, 2023
GSE225715	A nucleosome switch primes Hepatitis B Virus infection [Mnase-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Hepatitis B virus Homo sapiens	59	BEDGRAPH TBI	Andres Mansisidor	Mar 03, 2023
GSE193240	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq II]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE193238	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE192947	A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	29	BED CSV H5 TBI	Erin Jimenez	Jul 19, 2022
GSE212416	A single-cell atlas of gene expression and chromatin accessibility changes associated with cocaine addiction in the rat amygdala [snATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	12	BED CSV MTX RDS TBI TSV	Jessica Lu Zhou	Aug 09, 2023
GSE174376	A single-cell/nucleus atlas of pediatric rhabdomyosarcoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	64	BED MTX TBI TSV TXT SRA Run Selector	Michael Dyer	Apr 06, 2022
GSE259409	A type 2 cytokine Fc–IL-4 revitalises exhausted CD8+ T cells against cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	H5 MTX TBI TSV	Rong Fan	May 31, 2024
GSE237987	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors and Its Deficiency Drives Pre-memory B-cell Fate and Lymphomagenesis [Arid1a_multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	RDS TBI TSV	Christopher Russell Chin	Feb 02, 2024
GSE237990	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors with ARID1A Loss Driving Pre-memory B Cell Fate and Lymphomagenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	172	BED NARROWPEAK TBI TSV	Christopher Russell Chin	Feb 02, 2024
GSE237304	ARID1B regulates BCL11B-mediated non-canonical Activin signaling to maintain mesenchymal stem cell homeostasis in the mouse incisor [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 TBI TSV	Mingyi Zhang	Mar 20, 2024