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620 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					TDF
GSE59154	Profiling of mRNA N6-Adenosine Methylation (m6A) in Arabidopsis	Expression profiling by high throughput sequencing	Arabidopsis thaliana	8	TDF SRA Run Selector	Guan-Zheng Luo	Nov 06, 2014
GSE79259	The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	18	BED TDF WIG XLS SRA Run Selector	Jinkui Cheng	Apr 26, 2016
GSE79738	Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	14	BED TDF XLS SRA Run Selector	Jinkui Cheng	May 28, 2016
GSE89291	RNA-seq data for hdp1-1 and hdp2-1 mutants	Expression profiling by high throughput sequencing	Arabidopsis thaliana	6	TDF SRA Run Selector	Jian-Kang Zhu	Dec 29, 2016
GSE89320	A Pair of Transposon-derived Proteins Function in A Histone Acetyltransferase Complex for Active DNA Demethylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana	16	BEDGRAPH TDF WIG	Jian-Kang Zhu	Dec 29, 2016
GSE94720	Boundary Formation is an Inherent Property of Mobile Small RNA Gradients	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	2	TDF TXT SRA Run Selector	Marja Timmermans	Dec 01, 2017
GSE98283	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (Bisulfite-Seq)	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	4	TDF SRA Run Selector	Heng Zhang	Apr 28, 2017
GSE98285	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (miRNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	TDF TSV SRA Run Selector	Heng Zhang	Apr 28, 2017
GSE98286	The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	28	TDF	Heng Zhang	Apr 28, 2017
GSE102236	miRNA mobility is a highly regulated process in plants	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	8	TDF TXT SRA Run Selector	Marja Timmermans	Dec 01, 2017
GSE107750	H2A.Z ChIP-seq of WT, ros1-14, idm1-9, arp6-4 and pie1-6	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	10	TDF SRA Run Selector	Huang Huan	Dec 06, 2020
GSE108487	Genome-wide profilings of EDM2-mediated effects on H3K9me2 and transcripts in Arabidopsis thaliana	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	32	BED TDF SRA Run Selector	Xueqing Maggie Lu	Aug 03, 2020
GSE110336	Four SWI2/SNF2 chromatin remodeling proteins play roles as “double agents” in the tug of war between RNA-directed DNA methylation and active DNA demethylation in Arabidopsis [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	10	TDF WIG SRA Run Selector	Dong-Lei Yang	Oct 29, 2018
GSE110338	Four SWI2/SNF2 chromatin remodeling proteins play roles as "double agents" in the tug of war between RNA-directed DNA methylation and active DNA demethylation in Arabidopsis	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	12	TDF TXT WIG	Dong-Lei Yang	Oct 29, 2018
GSE126929	Paternally-acting canonical RNA-directed DNA methylation pathway genes sensitizes Arabidopsis endosperm to paternal dosage [Bisulfite-seq]	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	6	BED TDF TXT SRA Run Selector	satyaki P Rajavasireddy	May 01, 2019
GSE140566	Epigenetic memory marks determine epiallele stability at loci targeted by de novo DNA methylation	Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	16	TDF WIG SRA Run Selector	Jian-Kang Zhu	Apr 17, 2020
GSE152425	SIZ1-mediated SUMOylation of ROS1 Enhances Its Stability and Positively Regulates Active DNA Demethylation in Arabidopsis	Methylation profiling by high throughput sequencing	Arabidopsis thaliana	1	TDF SRA Run Selector	Jian-Kang Zhu	Jun 14, 2020
GSE159988	Genome-wide maps of H3K27me3 states in Arabidopsis thaliana flowers.	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	TDF SRA Run Selector	Ralf Mueller-Xing	Oct 23, 2022
GSE165877	Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	42	BW TDF TSV WIG SRA Run Selector	Cheng Zhao	Aug 11, 2021
GSE185388	ChIP-seq of a transcriptional regulator AtSDR4L	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	NARROWPEAK TDF TXT SRA Run Selector	Liang Song	Sep 21, 2022