GEO Browser - GEO

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3657 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					WIG
GSE16256	UCSD Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens	878	BAM BED WIG SRA Run Selector	UCSD AND SALK	Aug 03, 2009
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE17312	BI Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens	633	BAM BED CEL WIG SRA Run Selector	BROAD INSTITUTE	Aug 05, 2009
GSE18927	University of Washington Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Expression profiling by high throughput sequencing	Homo sapiens	758	BAM BED CEL TXT WIG SRA Run Selector	Northwest REMC	Jan 06, 2010
GSE24012	Transcriptional profiling of EJC depletion by RNA-Seq using the SOLiD platform (Applied Biosystems)	Expression profiling by high throughput sequencing	Drosophila melanogaster	6	BAM TXT WIG SRA Run Selector	Hugo Lavoie	Oct 20, 2010
GSE27243	A Transcriptomic Atlas of Mouse Neocortical Layers	Expression profiling by high throughput sequencing	Mus musculus	19	BAM GTF TSV WIG SRA Run Selector	T Grant Belgard	Aug 24, 2011
GSE28298	Tripartite organization of centromeric chromatin in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	28	BAM PDF SAM WIG	Jorja Henikoff	Dec 07, 2011
GSE29413	DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements and chimaeric transcripts in mouse ES cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BAM WIG SRA Run Selector	Eric Chuah	May 21, 2011
GSE30298	Identification and analysis of pancreatic islet specific enhancers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BAM TXT WIG SRA Run Selector	Patrick Plettner	Jun 30, 2011
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE30882	Embryonic stem cell based system for the discovery and mapping of developmental transcriptional programs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BED TXT WIG SRA Run Selector	Shaun Mahony	Nov 12, 2011
GSE31456	Transcriptional mechanisms controlling direct motor neuron programming	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BAM BED BW CEL TXT WIG SRA Run Selector	Shaun Mahony	Jul 04, 2013
GSE31602	Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling.	Expression profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	18	BAM BEDGRAPH GFF PAIR PDF TXT WIG SRA Run Selector	Jorja Henikoff	Dec 05, 2011
GSE31655	Dynamic Changes in Ezh2 Gene Occupancy Underlie Its Involvement in Neural Stem Cell Self-Renewal and Differentiation towards Oligodendrocytes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BAM BW WIG SRA Run Selector	Falak Sher	Jul 30, 2012
GSE39435	Induced Cdx2 binding in embryonic stem cells and endodermal cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BAM BW WIG SRA Run Selector	Shaun Mahony	Mar 27, 2014
GSE44412	Holocentromeres are dispersed point centromeres localized at transcription factor hotspots	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	19	BAM BED BEDGRAPH PDF WIG SRA Run Selector	Jorja Henikoff	Apr 08, 2014
GSE51336	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	266	BAM BED BIGWIG BROADPEAK NARROWPEAK WIG	ENCODE DCC	Nov 20, 2014
GSE51341	Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence	Other	Homo sapiens Mus musculus	32	BAM BED BIGWIG BROADPEAK NARROWPEAK TXT WIG	ENCODE DCC	Nov 19, 2014
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE83305	Stable Binding of the Conserved Transcription Factor Grainy Head to Its Target Genes Throughout Drosophila melanogaster Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	19	BAM BED TXT WIG SRA Run Selector	Melissa M Harrison	Feb 02, 2017