MAQC-II Project: Iconix data set

Identification of a stable gene signature of tolerance to renal allograft by meta-analysis.

The non-CG methylation is cell-type specific and conserved between human and mouse [Third-party reanalysis]

Initiation of mtDNA transcription is followed by pausing, and diverge across human cell types and during evolution

ADARs regulate small RNAs mapped to edited sequences

High-confidence Coding and Noncoding Transcriptome Maps

The identified enhancer RNAs across human cell and tissue types

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

Mitochondrial genome encoded gene expression values from RNA sequencing data from multiple tissue types

Pooled mouse macrophage datasets from GEO

Expression Profiling of Rhabdomyosarcoma patients and normal muscle samples

Multi-influential interactions controls behaviour and cognition through a limited number of pathways in Down syndrome mouse models (Affymetrix reanalysis)

Multi-influential interactions controls behaviour and cognition through a limited number of pathways in Down syndrome mouse models (RNA-Seq reanalysis II)

An unbiased machine learning exploration reveals gene sets predictive of allograft tolerance after kidney transplantation

Pan-cancer single-cell analysis reveals the heterogeneity and plasticity of cancer-associated fibroblasts in the tumor microenvironment

K562 and human brain transcriptomes, and various epigenomes from K562 and human/mouse brain curated from public databases and re-analyzed for comparison with the single-stranded DNA open-chromatin detected by CHEX-seq

Gene expression during pollen germination in Lily

Quantitative proteomics of anaerobic and aerobic yeast cultures

Subpopulation array data, Veening et al.

Secretome of Bone Marrow Stroma-Derived Neural Progenitor Cells: Proteomic Analysis