GEO Browser - GEO

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22 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus			Christopher Benner
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE250438	Role of the TRIF-IFN-I pathway in Helicobacter-induced gastric cancer progression in an accelerated murine disease model	Expression profiling by high throughput sequencing	Mus musculus	19	TXT	Christopher Benner	Apr 17, 2024
GSE145294	MCUb upregulation in the type 2 diabetic heart impacts cardiac function by altering mitochondrial metabolic fuel flux and the cardiac myocyte phosphoproteome	Expression profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	Christopher Benner	Dec 15, 2022
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE66457	Mutational blows to Sox2+ cells induce epithelial squamous tumor initiation	Expression profiling by high throughput sequencing	Mus musculus	12	TXT SRA Run Selector	Christopher Benner	Jan 01, 2017
GSE72670	New roles for DNA cytosine modification, eRNA, anchors and super-anchors in developing B cell progenitors	Methylation profiling by high throughput sequencing	Mus musculus	2	TXT SRA Run Selector	Christopher Benner	Sep 28, 2015
GSE64008	Nucleoporin Nup153 Regulates Stem Cell Pluripotency through Gene Silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BED TXT SRA Run Selector	Christopher Benner	Jun 19, 2015
GSE60523	An alternative pluripotent state confers interspecies chimaeric competency [Microarray]	Expression profiling by array	Mus musculus	12	CEL	Christopher Benner	May 06, 2015
GSE60603	An alternative pluripotent state confers interspecies chimaeric competency [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	14	TXT SRA Run Selector	Christopher Benner	May 06, 2015
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE63568	An alternative pluripotent state confers interspecies chimaeric competency [WGBS]	Methylation profiling by high throughput sequencing	Mus musculus	4	TSV SRA Run Selector	Christopher Benner	May 06, 2015
GSE60857	Coordinate Regulation of Enhancer Transcription at Super-Enhancers	Expression profiling by high throughput sequencing Other	Mus musculus	8	TXT SRA Run Selector	Christopher Benner	Dec 25, 2014
GSE57272	Conserved non-coding sequence 2 (CNS2) of the Foxp3 genomic locus is essential for the function and stability of regulatory T cells during their activation	Expression profiling by high throughput sequencing	Mus musculus	8	TXT SRA Run Selector	Christopher Benner	Sep 04, 2014
GSE54443	Mutant Huntingtin promotes neuronal death through cell autonomous microglial activation via myeloid lineage- determining factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BED TXT SRA Run Selector	Christopher Benner	Mar 02, 2014
GSE40173	Global changes in the nuclear positioning of chromatin domains and genomic interactions that orchestrate B cell fate	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BED BEDGRAPH TXT SRA Run Selector	Christopher Benner	Oct 09, 2012
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23620	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Agilent expression data)	Expression profiling by array	Mus musculus	24	TXT	Christopher Benner	Jan 01, 2011
GSE23621	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina expression data)	Expression profiling by array	Mus musculus	8	TXT	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011