GEO Browser - GEO

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131 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		FA
GSE21512	Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED FA TXT SRA Run Selector	Christopher Benner	May 27, 2010
GSE21978	A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FA TXT SRA Run Selector	Christopher Benner	Jun 13, 2010
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011
GSE61991	Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity	Expression profiling by high throughput sequencing	Mus musculus Rattus norvegicus	35	BED FA TXT SRA Run Selector	Xintian Arthur YOU	Feb 25, 2015
GSE79047	Reorganization of HoxD regulatory landscapes during the evolution of a snake-like body plan (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Pantherophis guttatus	9	BED BEDGRAPH FA SRA Run Selector	Isabel Guerreiro	Nov 05, 2016
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE118121	Chemical nucleoside conversion-based measurement of RNA stability by targeted and untargeted mRNA 3´ end sequencing	Expression profiling by high throughput sequencing	Mus musculus	14	BED FA TSV SRA Run Selector	Brian Reichholf	Dec 31, 2019
GSE149622	Skin-resident innate lymphoid cells converge on a pathogenic effector state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED FA MTX TBI TSV SRA Run Selector	Elena Torlai Triglia	Dec 14, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE166574	Induction of a chromatin boundary in vivo upon insertion of a TAD border (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED BEDGRAPH FA SRA Run Selector	Lucille Lopez-Delisle	Jul 05, 2021
GSE166578	Induction of a chromatin boundary in vivo upon insertion of a TAD border (Hi-C)	Other	Mus musculus	2	BED COOL FA TXT SRA Run Selector	Lucille Lopez-Delisle	Jul 05, 2021
GSE166583	Induction of a chromatin boundary in vivo upon insertion of a TAD border (MinION-nCATS)	Other	Mus musculus	1	BED FA SRA Run Selector	Lucille Lopez-Delisle	Jul 05, 2021
GSE181065	Genome wide mapping of Nr1d1 (Reverb α) binding sites in Th1 (T-helper type 1) cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED COD FA TSV ZIP SRA Run Selector	Pawan Gupta	Dec 30, 2022
GSE183155	Tracking bivalency through early mouse differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	BED BEDGRAPH BIGWIG FA TAB SRA Run Selector	Rohan Nishant Shah	Sep 10, 2021
GSE190955	Complex Genomic Patterns of Abasic Sites in Mammalian DNA Revealed by High-Resolution SSiNGLe-AP Method	Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	271	BED FA TXT SRA Run Selector	Huifen Cao	Sep 15, 2022
GSE194197	Reliance of neuronal gene expression on cohesin scales with chromatin loop length (5C)	Other	Mus musculus	16	BED FA TXT	LMS Bioinformatics Core	Apr 16, 2024
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE209815	Characterization of a strain-specific Cd1 reference genome reveals potential inter- and intra-strain functional variability [gDNA]	Genome variation profiling by high throughput sequencing	Mus musculus	5	BED FA GTF TXT VCF	Isaac Jacob Kremsky	Jun 08, 2023
GSE50944	NCoR Repression of LXRs Restricts Macrophage Biosynthesis of Insulin-Sensitizing Omega 3 Fatty Acids	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	23	BEDGRAPH FA TXT SRA Run Selector	Nathanael Judge Spann	Oct 09, 2013