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29954 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		SRA Run Selector
GSE10364	Small RNA profile in fully grown mammalian oocytes	Non-coding RNA profiling by high throughput sequencing	Mus musculus	3	TXT SRA Run Selector	ravi Sachidanandam	Mar 28, 2008
GSE11074	Chromatin state maps (H3K4me3 and H3K27me3) from partially and fully reprogrammed mouse cell lines	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	TXT SRA Run Selector	Tarjei S Mikkelsen	May 28, 2008
GSE11431	Mapping of transcription factor binding sites in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED TXT SRA Run Selector	Chia-Lin Wei	Jun 12, 2008
GSE11034	Genome-scale DNA methylation maps of pluripotent and differentiated cells	Methylation profiling by high throughput sequencing	Mus musculus	18	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 06, 2008
GSE11172	Genome-wide chromatin state maps of ES cells, ES-derived neural progenitor cells and brain tissue	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 06, 2008
GSE12241	Genome-wide maps of chromatin state in pluripotent and lineage-committed cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	TXT SRA Run Selector	Tarjei S Mikkelsen	Jul 25, 2008
GSE11724	Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	25	TXT SRA Run Selector	Whitehead Institute	Jul 30, 2008
GSE12074	Analysis of small RNAs in murine neutrophils by Solexa/Illumina genome analyzer	Non-coding RNA profiling by high throughput sequencing	Mus musculus	1	SRA Run Selector	Whitehead Institute	Jul 31, 2008
GSE12757	A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice	Non-coding RNA profiling by high throughput sequencing	Mus musculus	9	TXT SRA Run Selector	Alexei Aravin	Oct 01, 2008
GSE13084	Mapping polycomb complexes in human and mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TXT SRA Run Selector	Tarjei S Mikkelsen	Nov 01, 2008
GSE12680	Divergent transcription from active promoters	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	SRA Run Selector	Stuart Levine	Dec 01, 2008
GSE13511	Genome-wide profiling of PPARγ:RXR and RNA polymerase II	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED WIG XLS SRA Run Selector	H.G. Stunnenberg	Dec 10, 2008
GSE13622	The DNA-Encoded Nucleosome Organization of a Eukaryotic Genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Homo sapiens Mus musculus Saccharomyces cerevisiae synthetic construct	8	TAB TXT SRA Run Selector	Desiree Tillo	Dec 18, 2008
GSE12721	Chip-seq from MEF cells H3K27me3	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	GFF TXT WIG SRA Run Selector	Florian M Pauler	Dec 22, 2008
GSE14344	esBAF is an essential component of the core pluripotency transcriptional network	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CEL TXT SRA Run Selector	Raja Jothi	Jan 20, 2009
GSE14254	Global Mapping of Histone H3 K4 and K27 Trimethylation: Lineage Fate Determination of Differentiating CD4+ T Cells	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Weiqun Peng	Jan 21, 2009
GSE13845	ChIP-seq Accurately Predicts Tissue-Specific Activity of Enhancers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	TXT SRA Run Selector	Matthew James Blow	Feb 11, 2009
GSE15675	Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression	Other	Mus musculus	12	TXT SRA Run Selector	Jinkuk Kim	Apr 26, 2009
GSE15896	Genome wide uH2A localization analysis highlights Bmi1-dependent deposition of the mark at repressed genes.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED TXT SRA Run Selector	Raja Jothi	May 20, 2009
GSE16023	Loss of the Mili-interacting Tdrd1 activates transposons and alters Mili-associated small RNA profile	Non-coding RNA profiling by high throughput sequencing	Mus musculus	3	TXT SRA Run Selector	Ramesh Pillai	May 24, 2009