Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions

Linking genome structures to functions during lineage specification by simultaneous single-cell Hi-C and RNA-seq simultaneous single-cell Hi-C and RNA-seq

Unsupervised cell interaction profiling based on multiplet RNA sequencing reveals major architectural differences between small intestinal and colonic epithelium.

Single‐cell transcriptomic analysis of mouse CA1 inhibitory neurons

Single Cell RNA-seq Study of Midbrain and Dopaminergic Neuron Development in Mouse, Human, and Stem Cells

Spatio-temporal structure of cell fate decisions in murine neural crest

Single cell transcriptomic analysis (InDrops) of mouse splenic FoxP3+ regulatory CD4+ T cells isolated from different bins of Nr4a1-GFP expression

Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

Single-cell RNAseq analysis of renal endothelial cells in murine diabetic nephropathy

Epigenomic Landscape of Mouse Brain by Single Nucleus Methylation Sequencing [CEMBA snm3C-seq]

Single cell transcriptomic analysis (InDrops) of mouse mesenchymal stromal cells (mSCs or FAPs, fibro-adipogenic progenitors) isolated from lymph node, muscle and visceral adipose tissue

Single cell transcriptomic analysis (InDrops) of FoxP3+ regulatory CD4+ T cells isolated from the spleen and visceral adipose tissue of wild-type and VAT-TCR transgenic mice

Single-cell transcriptome and 3D genome atlas of the developing mouse brain

The transcriptional landscape of mouse blood stem/progenitor cell transitions at single cell resolution

Permanently Re-programmed Microglia in Spinal Cord Injury Contribute to Functional Recovery

Transcriptomic profiling maps anatomically patterned subpopulations among single embryonic cardiac cells

Single cell gene expression profiling of cell lines and murine peripheral blood mononuclear cells (PBMCs)

Transcriptomic profiling maps anatomically patterned subpopulations among single embryonic cardiac cells [RNA-seq]

Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes

Single cell RNA-seq of mouse brain vascular transcriptomes