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5581 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		XLSX
GSE71761	Comparing regeneration and fibrosis using Acomys and Mus	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	10	FA TXT XLSX SRA Run Selector	Ashley Seifert	Mar 17, 2016
GSE168876	Spiny mice (Acomys cahirinus) activate unique transcriptional programs after severe kidney injuries and regenerate organ function without fibrosis	Expression profiling by high throughput sequencing	Acomys cahirinus Mus musculus	18	XLSX SRA Run Selector	Daryl Okamura	Sep 13, 2021
GSE201446	Construction of the axolotl cell landscape using combinatorial hybridization sequencing at single cell resolution [scRNA-seq]	Expression profiling by high throughput sequencing	Ambystoma mexicanum Homo sapiens Mus musculus	615	TXT XLSX	Fang Ye	Jun 17, 2022
GSE242114	Identification of Hedgehog signaling responsive genes in A. sagrei and M. musculus via transcriptional profiling	Expression profiling by high throughput sequencing Other	Anolis sagrei Mus musculus	29	CSV VCF XLSX	Douglas Menke	Dec 15, 2023
GSE104290	Transcriptional Responses in Mouse Models of Invasive Pulmonary Aspergillosis	Expression profiling by high throughput sequencing	Aspergillus fumigatus Mus musculus	11	DIFF FPKM_TRACKING XLSX SRA Run Selector	Shiv D. Kale	Dec 05, 2017
GSE216386	Osteopontin Exacerbates High-Fat Diet-induced Metabolic Disorders in a microbiome-dependent Manner	Other Expression profiling by high throughput sequencing	Bacteria Mus musculus feces metagenome	126	TXT XLS XLSX	Jianing Chen	Oct 26, 2022
GSE59072	miRNA and consolidation of cued fear memory	Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Mus musculus cytomegalovirus 2 Rattus norvegicus human gammaherpesvirus 4	8	XLSX	Brian George Dias	Sep 30, 2014
GSE104277	Control of microRNA expression by mitochondrial function	Non-coding RNA profiling by array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Mus musculus Rattus norvegicus human gammaherpesvirus 4	3	TXT XLSX	Keshav Singh	Oct 19, 2017
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29	XLSX	Jennie Hamilton	Feb 28, 2015
GSE146873	RNA m6A methylation of 3ʹ splice site prevents binding of U2AF35 to inhibit splicing	Expression profiling by high throughput sequencing	Bombyx mori Caenorhabditis elegans Mus musculus	42	BW CSV XLSX SRA Run Selector	Ramesh Pillai	Apr 29, 2021
GSE241920	Quantitative PCR (qRT-PCR) analysis of micro RNA expression in mouse cells	Expression profiling by RT-PCR	Bordetella pertussis Mus musculus	3	XLSX	Kinarm Ko	Sep 04, 2023
GSE127731	The nuclei of somatic cells fused to mouse embryonic stem cells express pluripotency markers similar to early reprogramming events	Expression profiling by high throughput sequencing	Bos taurus Mus musculus	5	XLSX SRA Run Selector	M. Cristina Villafranca	Mar 02, 2019
GSE196043	mRNA aging shapes the Cap2 methylome in mammalian mRNA	Other Expression profiling by high throughput sequencing	Caenorhabditis elegans Danio rerio Drosophila melanogaster Homo sapiens Mus musculus	95	XLSX	Vladimir Despic	Dec 12, 2022
GSE278873	Reduction of DNA Topoisomerase Top2 reprograms the epigenetic landscape and extends health and life span across species	Expression profiling by high throughput sequencing	Caenorhabditis elegans Mus musculus	32	XLSX	Man Zhu	Oct 10, 2024
GSE124137	High throughput RNA sequencing of C. albicans colonizing the murine GI tract reveals a role for a secreted effecter in commensalism	Expression profiling by high throughput sequencing	Candida albicans Mus musculus	22	XLSX SRA Run Selector	Suzanne M Noble	Dec 31, 2018
GSE150855	Candida albicans sexual regulators control expression of genes important for commensal fitness [RNA-seq]	Expression profiling by high throughput sequencing	Candida albicans Mus musculus	58	XLSX SRA Run Selector	Suzanne M Noble	Jun 01, 2020
GSE219045	Preclinical Species Gene Expression Database: Development and Meta-Analysis	Expression profiling by high throughput sequencing	Canis lupus familiaris Macaca fascicularis Mus musculus Rattus norvegicus	761	XLSX	Terry Van Vleet	Dec 12, 2022
GSE65276	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease	Protein profiling by protein array	Caprine arthritis encephalitis virus Homo sapiens Human alphaherpesvirus 2 Human endogenous retrovirus K Klebsiella pneumoniae Mus musculus Mycobacterium tuberculosis Proteus mirabilis Torque teno virus human gammaherpesvirus 4	1	XLSX	Jennie Hamilton	Feb 28, 2015