GEO Browser - GEO

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35 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Rattus norvegicus		BIGWIG
GSE163474	Rat PRDM9 shapes recombination landscapes, duration of meiosis, gametogenesis, and age of fertility	Other Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	13	BIGWIG TAB SRA Run Selector	Kevin Brick	Mar 25, 2021
GSE214449	FOSL1 modulates Schwann cell responses in the wound microenvironment and regulates peripheral nerve regeneration	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	2	BIGWIG NARROWPEAK	Qianqian Chen	Oct 02, 2022
GSE141278	Transcription regulation of SNCA by dystonia type 6 gene product THAP1	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	37	BED BEDGRAPH BIGWIG TSV	Fubo Cheng	Sep 28, 2022
GSE184961	THAP1 is cell type dependent regulator of SP1 family crucial for dystonic syndromes in human and rat	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	30	BIGWIG TAB TXT	Fubo Cheng	Sep 28, 2022
GSE201686	Transcription regulation of SNCA by dystonia type 6 gene product THAP1 [Rat_ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	9	BIGWIG	Fubo Cheng	Sep 28, 2022
GSE99278	Integrative epigenomic analyses of early-life hypothalamic response to augmented maternal care [RNA-seq]	Expression profiling by high throughput sequencing	Rattus norvegicus	6	BIGWIG SRA Run Selector	Keith Dunaway	Apr 21, 2019
GSE99282	Integrative epigenomic analyses of early-life hypothalamic response to augmented maternal care	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by array	Rattus norvegicus	24	BED BIGWIG RCC	Keith Dunaway	Apr 21, 2019
GSE179217	H3K4 di-methylation controls smooth muscle cell lineage identity and vascular homeostasis [CUT&Tag_H3K4me2_FLAG]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	13	BIGWIG XLSX SRA Run Selector	Delphine Gomez	Nov 08, 2021
GSE179218	H3K4 di-methylation controls smooth muscle cell lineage identity and vascular homeostasis [CUT&Tag_HA-TET2]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	3	BIGWIG XLSX SRA Run Selector	Delphine Gomez	Nov 08, 2021
GSE179220	H3K4 di-methylation controls smooth muscle cell lineage identity and vascular homeostasis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	33	BIGWIG	Delphine Gomez	Oct 15, 2021
GSE211337	The transcription factor Stat-1 is essential for Schwann cell differentiation, myelination and myelin sheath regeneration [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	2	BIGWIG NARROWPEAK	Yun Gu	Sep 11, 2023
GSE163302	Conserved Spermatogonial Gene Networks Couple to Glutathione and Pentose Phosphate Metabolism but not Cysteine Biosynthesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	8	BIGWIG TXT SRA Run Selector	F. Kent Hamra	Dec 17, 2020
GSE144147	A Balance Between Intermediate Filaments and Microtubules Maintains Nuclear Architecture in the Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	28	BED BIGWIG XLS SRA Run Selector	Julie Heffler	Jan 24, 2020
GSE207777	Glis3 regulates the expression of thyroid hormone synthetic genes in coordination with other thyroid transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	21	BED BIGWIG	Hong Soon Kang	Apr 06, 2023
GSE241559	SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	16	BED BIGWIG NARROWPEAK TXT XLS	Fabian Michael Kern	Feb 23, 2024
GSE241561	SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	33	BIGWIG MTX NARROWPEAK RESULTS TSV	Fabian Michael Kern	Feb 23, 2024
GSE63527	Tissue-specific DNA methylation is conserved across species and driven by primary sequence conservation	Methylation profiling by high throughput sequencing	Mus musculus Rattus norvegicus	8	BIGWIG SRA Run Selector	Daofeng Li	Aug 24, 2017
GSE89919	Whole Genome Bisulfite sequencing for liver DNA methylation analysis of rat exposed to 0.05% Pb	Methylation profiling by high throughput sequencing	Rattus norvegicus	4	BIGWIG SRA Run Selector	Sun hong ling	Nov 17, 2016
GSE161241	MiR-124 synergism with ELAVL3 enhances target gene expression to promote neuronal maturity	Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	18	BIGWIG BW	Ya-Lin Lu	May 25, 2021
GSE58009	Required Enhancer: Matrin-3 Structure Interactions for Homeodomain Transcription Programs	Genome binding/occupancy profiling by high throughput sequencing Other	Rattus norvegicus	11	BIGWIG SRA Run Selector	Qi Ma	Aug 03, 2014