GEO Browser - GEO

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38 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Rattus norvegicus		BIGWIG
GSE99282	Integrative epigenomic analyses of early-life hypothalamic response to augmented maternal care	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by array	Rattus norvegicus	24	BED BIGWIG RCC	Keith Dunaway	Apr 21, 2019
GSE141278	Transcription regulation of SNCA by dystonia type 6 gene product THAP1	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Rattus norvegicus	37	BED BEDGRAPH BIGWIG TSV	Fubo Cheng	Sep 28, 2022
GSE144147	A Balance Between Intermediate Filaments and Microtubules Maintains Nuclear Architecture in the Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	28	BED BIGWIG XLS SRA Run Selector	Julie Heffler	Jan 24, 2020
GSE163562	Genome wide chromatin accessibility analysis reveals a role for CREB in retinal ganglion cells axon growth decline in development and regeneration after optic nerve injury [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	4	BED BIGWIG SRA Run Selector	Guoyan Zhao	Jul 28, 2021
GSE163564	Genome wide chromatin accessibility analysis reveals a role for CREB in retinal ganglion cells axon growth decline in development and regeneration after optic nerve injury	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	12	BED BIGWIG TXT	Guoyan Zhao	Jul 28, 2021
GSE197926	TAD Evolutionary and functional characterization reveals diversity in mammalian TAD boundary properties and function	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Hylobates moloch Macaca mulatta Mus caroli Mus musculus Mus pahari Nomascus leucogenys Rattus norvegicus	85	BED BEDGRAPH BIGWIG BW COOL XLSX	Mariam Okhovat	Oct 20, 2023
GSE207777	Glis3 regulates the expression of thyroid hormone synthetic genes in coordination with other thyroid transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	21	BED BIGWIG	Hong Soon Kang	Apr 06, 2023
GSE241559	SRF transcriptionally regulates the oligodendrocyte cytoskeleton during CNS myelination (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	16	BED BIGWIG NARROWPEAK TXT XLS	Fabian Michael Kern	Feb 23, 2024
GSE42478	Defining a molecular roadmap of cellular reprogramming into iPS cells	Expression profiling by array Non-coding RNA profiling by array Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by genome tiling array	Betapolyomavirus hominis Betapolyomavirus macacae Homo sapiens Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human gammaherpesvirus 8 Human immunodeficiency virus 1 JC polyomavirus Merkel cell polyomavirus Murid betaherpesvirus 1 Murid gammaherpesvirus 4 Mus musculus Rattus norvegicus human gammaherpesvirus 4	61	BIGWIG CEL PAIR TXT	Ben S. Wittner	Dec 20, 2012
GSE58009	Required Enhancer: Matrin-3 Structure Interactions for Homeodomain Transcription Programs	Genome binding/occupancy profiling by high throughput sequencing Other	Rattus norvegicus	11	BIGWIG SRA Run Selector	Qi Ma	Aug 03, 2014
GSE63527	Tissue-specific DNA methylation is conserved across species and driven by primary sequence conservation	Methylation profiling by high throughput sequencing	Mus musculus Rattus norvegicus	8	BIGWIG SRA Run Selector	Daofeng Li	Aug 24, 2017
GSE81811	Temporal Transcriptomic and Proteomic Landscapes of Deteriorating Pancreatic Islets in Type 2 Diabetic Rats	Expression profiling by high throughput sequencing	Rattus norvegicus	34	BIGWIG BW SRA Run Selector	Wen Zhong	Dec 22, 2017
GSE89919	Whole Genome Bisulfite sequencing for liver DNA methylation analysis of rat exposed to 0.05% Pb	Methylation profiling by high throughput sequencing	Rattus norvegicus	4	BIGWIG SRA Run Selector	Sun hong ling	Nov 17, 2016
GSE99278	Integrative epigenomic analyses of early-life hypothalamic response to augmented maternal care [RNA-seq]	Expression profiling by high throughput sequencing	Rattus norvegicus	6	BIGWIG SRA Run Selector	Keith Dunaway	Apr 21, 2019
GSE110282	2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) Alters Hepatic Polyunsaturated Fatty Acid Metabolism and Eicosanoid Biosynthesis in Female Sprague-Dawley Rats [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	10	BIGWIG SRA Run Selector	Timothy Zacharewski	Dec 01, 2018
GSE129924	Free circular introns with an unusual branchpoint in neuronal projections	Expression profiling by high throughput sequencing Other	Rattus norvegicus	22	BIGWIG BW SRA Run Selector	Harleen Saini	Apr 18, 2019
GSE133917	The NMDA receptor subunit GluN3A regulates a program of synaptic activity-induced and MEF2C-dependent transcription	Expression profiling by high throughput sequencing	Rattus norvegicus	12	BIGWIG XLSX SRA Run Selector	Anne West	Jul 08, 2019
GSE134799	ChIP assay in adult ventricular cardiomyocytes	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	60	BIGWIG SRA Run Selector	Yuliang Tan	Dec 09, 2020
GSE134800	PRO-seq assay in adult ventricular cardiomyocytes	Expression profiling by high throughput sequencing Other	Rattus norvegicus	10	BIGWIG SRA Run Selector	Yuliang Tan	Dec 09, 2020
GSE134801	Adult ventricular cardiomyocytes	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus	70	BIGWIG	Yuliang Tan	Dec 09, 2020